{"id":"W4410943837","doi":"10.1080/20477724.2025.2513769","title":"Coriander borne <i>Salmonella</i> superbug: genomic assessments of chromosomal and plasmid-associated resistance, virulence and MGEs of XDR <i>Salmonella</i> enterica Typhi NH1","year":2025,"lang":"en","type":"article","venue":"Pathogens and Global Health","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Salmonella enterica; Salmonella typhi; Virulence; Plasmid; Salmonella; Biology; Microbiology; Genetics; Genomic island; Foodborne pathogen; Virology; Gene; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002033004,0.0005383962,0.0003576209,0.0006585923,0.0002976989,0.0003742135,0.0002411489,0.0002883655,0.001185473],"category_scores_gemma":[0.0004700412,0.000138597,0.0004463532,0.00107986,0.000215635,0.0001715853,0.0003944735,0.0003379061,0.0003150717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000416434,"about_ca_system_score_gemma":0.0005151712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01143459,"about_ca_topic_score_gemma":0.01257941,"domain_scores_codex":[0.9997134,0.00001677825,0.00002434168,0.0001059815,0.00006686438,0.00007268401],"domain_scores_gemma":[0.9996966,0.00003248028,0.00009242577,0.00004171339,0.00008420344,0.0000525355],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002703588,0.00004379582,0.01865178,0.0001252342,0.00001779808,0.0002075025,0.0003108805,0.0001341834,0.9752325,0.00004210814,0.0001083047,0.004855431],"study_design_scores_gemma":[0.00002851755,0.0009045779,0.8156453,0.00005695528,0.0001161038,0.001325868,0.001696844,0.001264518,0.1717581,0.00008376803,0.007081847,0.0000377046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940965,0.0001397394,0.0005057398,0.00004137368,0.00000660478,0.00004585234,0.004544057,0.00003439878,0.0005856465],"genre_scores_gemma":[0.9780719,0.0002572061,0.003251968,0.00008043242,0.000006585455,0.00008894232,0.01642953,0.00003978213,0.001773628],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01143459,"threshold_uncertainty_score":0.02273607,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01272995882868364,"score_gpt":0.2832849499141912,"score_spread":0.2705549910855076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}