{"id":"W4411009297","doi":"10.1093/gbe/evaf114","title":"Comparative Genomics Reveals Intra and Inter Species Variation in the Pathogenic Fungus <i>Batrachochytrium dendrobatidis</i>","year":2025,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Food and Agriculture; Canadian Institute for Advanced Research; Gordon and Betty Moore Foundation; U.S. Department of Agriculture; National Institutes of Health; National Science Foundation","keywords":"Biology; Fungus; Pathogenic fungus; Variation (astronomy); Genomics; Comparative genomics; Mycology; Zoology; Evolutionary biology; Ecology; Genetics; Genome; Gene; Botany","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002159643,0.0001123757,0.0001390175,0.00004919014,0.0001079144,0.00001815984,0.00008874125,0.0001411428,0.000003626925],"category_scores_gemma":[0.00003379243,0.00008696789,0.00003102017,0.00008719495,0.000114706,0.000005512665,0.00006558347,0.00008074799,0.000002341313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002257176,"about_ca_system_score_gemma":0.00003667543,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001096977,"about_ca_topic_score_gemma":0.00007712311,"domain_scores_codex":[0.9992217,0.0001614962,0.0001693853,0.0002617582,0.00002348692,0.0001622066],"domain_scores_gemma":[0.9997293,0.00003202921,0.00005178264,0.0001319022,0.00002941846,0.00002557956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001096586,0.00003030567,0.04544413,0.00001382014,0.00003241058,0.000001213719,0.0001762679,0.000008692063,0.951421,0.002449515,0.0001806371,0.0001323144],"study_design_scores_gemma":[0.0003121901,0.0001240743,0.9917505,0.000008211939,0.00003595249,0.00001877236,0.0002215504,0.00005651412,0.0006400337,0.001829705,0.004889845,0.0001126462],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851344,0.009275535,0.00418027,0.0001558948,0.000111593,0.0002070712,0.0003514845,0.000004963802,0.000578797],"genre_scores_gemma":[0.9979039,0.001096042,0.0001224969,0.0003178171,0.0001060888,0.00002310016,0.000304225,0.000002865057,0.0001234504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.950781,"threshold_uncertainty_score":0.3546448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009615772744218454,"score_gpt":0.2351514674395259,"score_spread":0.2255356946953075,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}