{"id":"W4411012216","doi":"10.1111/1462-2920.70112","title":"A Biosynthetic and Taxonomic Atlas of the Global Lichen Holobiont","year":2025,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Cancer Institute; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Biology; Lichen; Microbacterium; Holobiont; Metagenomics; Anthozoa; Ecology; Bacteria; 16S ribosomal RNA; Symbiosis; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005773369,0.00008932286,0.0001353292,0.000003918268,0.00008395578,0.00000451363,0.0001927959,0.0001151358,0.0002357064],"category_scores_gemma":[0.000008898801,0.00003081309,0.00005974945,0.00006500744,0.0003824345,0.00001477399,0.0002731479,0.00006250374,0.00003156141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005206166,"about_ca_system_score_gemma":0.000003874842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005996219,"about_ca_topic_score_gemma":0.0001658057,"domain_scores_codex":[0.9994153,0.00007960293,0.0001400643,0.0001972813,0.0000132121,0.0001544919],"domain_scores_gemma":[0.9998005,0.00006268162,0.00005693976,0.00005647582,0.000001467573,0.00002194805],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001451711,0.00004965825,0.1246015,0.0000016312,0.00001559665,2.455228e-7,0.00000863182,2.836679e-7,0.8686554,0.0004200061,0.0002850603,0.005947402],"study_design_scores_gemma":[0.0002059744,0.0001482482,0.8614557,0.00000805058,0.00002291603,0.00002804281,0.0001398695,0.000003776265,0.04627737,0.0004380244,0.0911663,0.0001057015],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960568,0.0004244226,6.728283e-7,0.001751603,0.0001635072,0.0001577748,0.0001710473,0.000007978511,0.001266222],"genre_scores_gemma":[0.9990063,0.00004426246,0.00002427105,0.0005944792,0.00001821203,0.000006500366,0.00001697252,2.934037e-7,0.0002887445],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.822378,"threshold_uncertainty_score":0.258082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002550917252397605,"score_gpt":0.1529138422819048,"score_spread":0.1503629250295072,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}