{"id":"W4411060638","doi":"10.1128/aem.00348-25","title":"Identification of circulating human papillomavirus types through high-throughput sequencing of Canadian municipal and institutional wastewater samples","year":2025,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Population; Amplicon; Human papillomavirus; Cervical cancer; Biology; Medicine; Oncology; Virology; Cancer; Environmental health; Internal medicine; Genetics; Polymerase chain reaction; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006839862,0.0004246196,0.0004860389,0.001958938,0.002894952,0.00187114,0.0007829547,0.0006639387,0.001310062],"category_scores_gemma":[0.001581516,0.0002612481,0.000477776,0.004924634,0.0006190423,0.0002059072,0.0007786167,0.0003937688,0.0003612798],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008766877,"about_ca_system_score_gemma":0.0135369,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8639441,"about_ca_topic_score_gemma":0.903239,"domain_scores_codex":[0.9984624,0.00007240852,0.00006432211,0.0003744618,0.0007282793,0.0002981583],"domain_scores_gemma":[0.998701,0.00008088003,0.0001127497,0.00005291565,0.0009433869,0.0001090542],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004277832,0.0002312253,0.7508723,0.000590118,0.0001767633,0.0005985227,0.004744384,0.002600741,0.1365879,0.0006430164,0.00514819,0.09737908],"study_design_scores_gemma":[0.0000329308,0.0001426419,0.9503343,0.00007382613,0.0001230776,0.0003607785,0.003331618,0.003449907,0.01930268,0.0002065147,0.02258743,0.00005437034],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824004,0.0004965003,0.003376494,0.0002065202,0.00001365502,0.000193693,0.009769962,0.0001214987,0.003421231],"genre_scores_gemma":[0.9728402,0.0007038459,0.009459357,0.000310552,0.00001464796,0.0001636501,0.01217307,0.00006906777,0.004265527],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1360559,"threshold_uncertainty_score":0.2737144,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0260502227944569,"score_gpt":0.2669522093948453,"score_spread":0.2409019866003884,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}