{"id":"W4411091836","doi":"10.3390/cancers17121901","title":"Applications for Circulating Cell-Free DNA in Oral Squamous Cell Carcinoma: A Non-Invasive Approach for Detecting Structural Variants, Fusions, and Oncoviruses","year":2025,"lang":"en","type":"article","venue":"Cancers","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network; Princess Margaret Cancer Centre; University of Toronto","funders":"","keywords":"Biology; Copy-number variation; Fusion gene; Gene; Malignancy; genomic DNA; Cancer; Cancer research; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008079162,0.0005736169,0.0004708049,0.00166192,0.0002967966,0.0005761154,0.0004285486,0.0009636506,0.001581213],"category_scores_gemma":[0.0009972915,0.0003521521,0.0004204554,0.0005917177,0.0004753071,0.0003934353,0.0004776783,0.0005624155,0.0005261084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003677224,"about_ca_system_score_gemma":0.0003332832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007143963,"about_ca_topic_score_gemma":0.001583012,"domain_scores_codex":[0.9991499,0.000199446,0.00003806487,0.0002811996,0.0002676603,0.00006366968],"domain_scores_gemma":[0.9994596,0.0002170074,0.00009118146,0.00005100272,0.0001282587,0.00005304354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001697606,0.00004305558,0.008352065,0.0002145366,0.00002955757,0.0001732349,0.00009479417,0.0001825056,0.9687877,0.0001132489,0.0001267803,0.02171268],"study_design_scores_gemma":[0.00004825393,0.0008428545,0.03440614,0.00007250767,0.0002168682,0.004010141,0.0002543726,0.01192924,0.9398524,0.0007530539,0.007552055,0.00006206601],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7556648,0.02184892,0.2150588,0.0006940028,0.0003780817,0.0005752915,0.001760618,0.0008884447,0.003131126],"genre_scores_gemma":[0.7553743,0.004678433,0.235224,0.0004070314,0.0001254927,0.0004768353,0.0008483384,0.00008203309,0.002783562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00166192,"threshold_uncertainty_score":0.005289733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0112585846548567,"score_gpt":0.2532221576121198,"score_spread":0.2419635729572631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}