{"id":"W4411095315","doi":"10.1136/gutjnl-2025-335331","title":"Adherent-invasive <i>Escherichia coli</i> in Crohn’s disease: the 25th anniversary","year":2025,"lang":"en","type":"review","venue":"Gut","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"College of Veterinary Medicine, Cornell University; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"Biology; Escherichia coli; Microbiome; Disease; Microbiology; Virulence; Crohn's disease; Medical microbiology; Bioinformatics; Genetics; Pathology; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008043381,0.0008271316,0.0009489915,0.001927884,0.0003409745,0.001304978,0.0005884413,0.001960284,0.003252468],"category_scores_gemma":[0.001859141,0.0002431689,0.000416084,0.00179452,0.0007485125,0.002361556,0.001206465,0.002707575,0.002412204],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000953272,"about_ca_system_score_gemma":0.0009590024,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001250613,"about_ca_topic_score_gemma":0.001668543,"domain_scores_codex":[0.9997427,0.00004598067,0.00003392958,0.00004659657,0.00009482149,0.000035846],"domain_scores_gemma":[0.9989471,0.000418213,0.0001184938,0.00003043694,0.0003264733,0.0001592621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000266267,0.00006303946,0.0002742799,0.01058783,0.00006708148,0.0002973325,0.0001594698,0.0002897667,0.002009853,0.006119955,0.19049,0.7893751],"study_design_scores_gemma":[0.000008522418,0.00009201896,0.0005721638,0.001465522,0.00003258495,0.0006611208,0.00004143819,0.00003789629,0.0002310131,0.000919614,0.995924,0.00001410891],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001257457,0.9942303,0.00007610337,0.001875907,0.00285718,0.00000237127,0.0000163568,0.000009971713,0.0008060482],"genre_scores_gemma":[0.001157833,0.9927033,0.000141286,0.001639295,0.002819096,0.000004992632,0.00004900048,0.000004848393,0.001480469],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.003252468,"threshold_uncertainty_score":0.01088059,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01443235440315121,"score_gpt":0.27799109761598,"score_spread":0.2635587432128287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}