{"id":"W4411095315","doi":"10.1136/gutjnl-2025-335331","title":"Adherent-invasive <i>Escherichia coli</i> in Crohn’s disease: the 25th anniversary","year":2025,"lang":"en","type":"review","venue":"Gut","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"College of Veterinary Medicine, Cornell University; Leona M. and Harry B. Helmsley Charitable Trust","keywords":"Biology; Escherichia coli; Microbiome; Disease; Microbiology; Virulence; Crohn's disease; Medical microbiology; Bioinformatics; Genetics; Pathology; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001371639,0.0004185926,0.0005222312,0.00007402145,0.00008943584,0.00003971777,0.0006554077,0.0002944902,0.00005578683],"category_scores_gemma":[0.0001865216,0.0003184052,0.0005084978,0.0001923543,0.000115004,0.00000351003,0.0003403943,0.0002793194,0.000113984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000669279,"about_ca_system_score_gemma":0.001978606,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001155104,"about_ca_topic_score_gemma":0.0001088114,"domain_scores_codex":[0.9982367,0.0003246786,0.000369978,0.0005627251,0.000152882,0.0003529954],"domain_scores_gemma":[0.9987074,0.00003855447,0.0001810501,0.0008631763,0.00005528529,0.000154503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001140315,0.0009058938,0.002365152,0.125242,0.002171656,0.0115499,0.0001984659,0.00006172663,0.0003662169,0.001353254,0.2453173,0.6093282],"study_design_scores_gemma":[0.0002628845,0.00001130569,0.005435123,0.003263331,0.000418909,0.000001763151,0.00002068089,0.000001362965,0.000004233292,0.00002056686,0.9901905,0.0003693532],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001194148,0.9935588,0.000006181379,0.00002444632,0.0003278778,0.001226519,0.0003820906,0.0000181081,0.003261776],"genre_scores_gemma":[0.0001631582,0.9928537,0.00001705233,0.0004020465,0.0002847357,0.0003515095,0.0007661042,0.0000451762,0.005116532],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.7448732,"threshold_uncertainty_score":0.9999268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01443235440315121,"score_gpt":0.27799109761598,"score_spread":0.2635587432128287,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}