{"id":"W4411152874","doi":"10.1128/spectrum.00513-25","title":"Comparative genome analysis investigation of nosocomial and community-acquired cases of Legionnaires’ disease caused by ST2858 and ST378","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Polytechnique Montréal; Hôpital Maisonneuve-Rosemont; Université Laval; Université de Montréal; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; McGill University","funders":"","keywords":"Legionnaires' disease; Outbreak; Biology; Legionella pneumophila; Legionella; Genome; Genetic diversity; Microbiology; Genetics; Virology; Gene; Medicine; Environmental health; Bacteria; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001795261,0.0002950508,0.0002258408,0.001088396,0.0003423951,0.0003481401,0.0002428413,0.0002665836,0.001068924],"category_scores_gemma":[0.0007613534,0.0001339296,0.0002813122,0.001103341,0.0002390444,0.00008665668,0.0002432412,0.0002263879,0.00012335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009363886,"about_ca_system_score_gemma":0.0004410807,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06714113,"about_ca_topic_score_gemma":0.09293553,"domain_scores_codex":[0.9997211,0.00003368832,0.00001472263,0.00007426519,0.00008208914,0.00007407957],"domain_scores_gemma":[0.9996569,0.00008619997,0.00007727164,0.00001619226,0.0001008287,0.00006265962],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005607783,0.0001546585,0.8541856,0.0001191735,0.0001473425,0.002621515,0.001343781,0.0003976614,0.1318252,0.0001165037,0.0003388973,0.008188912],"study_design_scores_gemma":[0.000009795666,0.0001405549,0.9953596,0.00000563092,0.00002968845,0.0008278766,0.0004546418,0.0004778664,0.002236418,0.00001683348,0.0004378953,0.000003110764],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992643,0.00004479858,0.00009548257,0.000008638063,0.000001233365,0.000008307207,0.0003898987,0.000003090091,0.0001842814],"genre_scores_gemma":[0.9979996,0.00004884541,0.0003339943,0.00001699597,0.000002322342,0.000007041112,0.001423153,0.000002109783,0.0001658905],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06714113,"threshold_uncertainty_score":0.1335006,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01673075410533917,"score_gpt":0.2764997870653891,"score_spread":0.2597690329600499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}