{"id":"W4411155989","doi":"10.1093/jacamr/dlaf058","title":"Genomic diversity of clinically relevant bacterial pathogens from an acute care hospital in Suva, Fiji","year":2025,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Impact","funders":"Wellcome Trust; Bill and Melinda Gates Foundation","keywords":"Biology; Acinetobacter baumannii; Microbiology; Antibiotic resistance; Carbapenem; Transmission (telecommunications); Enterococcus; Staphylococcus aureus; Klebsiella pneumoniae; Acinetobacter; Pseudomonas aeruginosa; Genetics; Escherichia coli; Gene; Bacteria; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001935865,0.0002830168,0.0005005338,0.00007724966,0.0001367547,0.00004167543,0.0007157555,0.0003715181,0.00004186254],"category_scores_gemma":[0.0002209947,0.0003092903,0.0001925364,0.0001981228,0.0002939325,0.00001580943,0.0006059374,0.0001745912,0.000007715568],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009069456,"about_ca_system_score_gemma":0.0003082975,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002403125,"about_ca_topic_score_gemma":0.001547223,"domain_scores_codex":[0.9977015,0.0001651184,0.0007735422,0.0008234052,0.0001440185,0.0003924554],"domain_scores_gemma":[0.9984391,0.0000454458,0.0003385829,0.0008722547,0.0002223778,0.00008222063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001626989,0.0001424321,0.1860834,0.0000690833,0.0001046246,0.00002835159,0.000253431,0.000005586571,0.8089275,0.00003532649,0.002504736,0.0002185335],"study_design_scores_gemma":[0.00184977,0.0002160128,0.8622187,0.0002620751,0.0001214453,9.7509e-7,0.0002123192,0.00000234583,0.1277621,0.0000734308,0.006814855,0.00046597],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962202,0.0002740971,0.0002954206,0.0001798734,0.0008696548,0.0003445944,0.001225209,0.00001685506,0.0005740803],"genre_scores_gemma":[0.9903548,0.0006373263,0.007031855,0.0001901296,0.0001975458,0.000003168672,0.0007160099,0.00002896271,0.0008402174],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6811655,"threshold_uncertainty_score":0.9999359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005400558149834754,"score_gpt":0.2496750938621404,"score_spread":0.2442745357123057,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}