{"id":"W4411155989","doi":"10.1093/jacamr/dlaf058","title":"Genomic diversity of clinically relevant bacterial pathogens from an acute care hospital in Suva, Fiji","year":2025,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Impact","funders":"Wellcome Trust; Bill and Melinda Gates Foundation","keywords":"Biology; Acinetobacter baumannii; Microbiology; Antibiotic resistance; Carbapenem; Transmission (telecommunications); Enterococcus; Staphylococcus aureus; Klebsiella pneumoniae; Acinetobacter; Pseudomonas aeruginosa; Genetics; Escherichia coli; Gene; Bacteria; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002610263,0.0003998554,0.000241681,0.001624846,0.0008144082,0.0006907337,0.0003479631,0.0004824992,0.001281974],"category_scores_gemma":[0.000989724,0.0001867502,0.0002746073,0.00171364,0.000487064,0.0002679714,0.0007669368,0.0002946867,0.0001318328],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004913761,"about_ca_system_score_gemma":0.0006683888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01560767,"about_ca_topic_score_gemma":0.02170679,"domain_scores_codex":[0.9996306,0.00004762232,0.00003189275,0.0001175772,0.00004709309,0.0001251517],"domain_scores_gemma":[0.9994565,0.0001103274,0.0001988323,0.00002568104,0.0000904189,0.0001182],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001626948,0.00003458222,0.9683613,0.0001666048,0.0000696753,0.0008766843,0.002229503,0.0001464606,0.01914673,0.00005877587,0.000373649,0.008373394],"study_design_scores_gemma":[0.00000268804,0.00004371364,0.9975255,0.00001969347,0.00001322827,0.0004176463,0.001199741,0.00007808972,0.0003195779,0.00001035862,0.0003660508,0.000003767232],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986125,0.0001204405,0.00006610945,0.00004690612,0.000003250535,0.00001041391,0.0009034699,0.000002308003,0.0002345655],"genre_scores_gemma":[0.9977432,0.0001480619,0.0002928025,0.00009487548,0.000007261057,0.00002582203,0.001505415,0.000001758854,0.0001808217],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01560767,"threshold_uncertainty_score":0.03103369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005400558149834754,"score_gpt":0.2496750938621404,"score_spread":0.2442745357123057,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}