{"id":"W4411165391","doi":"10.20944/preprints202506.0789.v1","title":"Pseudogenization of the Chaperonin System in ‘<em>Candidatus</em> Phytoplasma pruni’ Reveals Insights into the Role of GroEL/Cpn60 in Phytopathogenic Mollicutes","year":2025,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"GroEL; Chaperonin; Candidatus; Mollicutes; Biology; Virology; Microbiology; Genetics; 16S ribosomal RNA; Bacteria; Escherichia coli; Mycoplasma; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009835314,0.0002034064,0.0001806453,0.0004003616,0.0002013318,0.00036641,0.0002771489,0.0003714623,0.0006421103],"category_scores_gemma":[0.0001611283,0.0001333612,0.0004211839,0.0004317805,0.0002278093,0.0001890642,0.0002583577,0.000579644,0.0003278058],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002020587,"about_ca_system_score_gemma":0.0001641081,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001236326,"about_ca_topic_score_gemma":0.001358462,"domain_scores_codex":[0.9998997,0.000006640518,0.000008899335,0.0000301661,0.0000293653,0.00002514947],"domain_scores_gemma":[0.999815,0.00003159485,0.00005177566,0.00003801715,0.00002785376,0.00003575812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000138287,0.00001403109,0.00175687,0.00003771928,0.000007777387,0.0002118849,0.00004434594,0.00003832416,0.9950017,0.00009193988,0.00004903783,0.002608007],"study_design_scores_gemma":[0.00002448891,0.0003416911,0.3704934,0.00004038729,0.0001126119,0.003876165,0.000456241,0.002756045,0.60614,0.0003386589,0.01537605,0.00004431773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959127,0.0007761162,0.001200575,0.0001087044,0.00002946322,0.00001346526,0.0009838752,0.00004661618,0.0009284532],"genre_scores_gemma":[0.9905606,0.0005286186,0.002399487,0.0001544426,0.00001734836,0.00001660734,0.004447872,0.00003583803,0.001839196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001236326,"threshold_uncertainty_score":0.002458274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0235730811313092,"score_gpt":0.2322262754463829,"score_spread":0.2086531943150737,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}