{"id":"W4411206236","doi":"10.1073/pnas.2426508122","title":"The great phage escape: Activating and escaping lactococcal antiphage systems","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"DSM (Canada)","funders":"Science Foundation Ireland","keywords":"Bacteriophage; Biology; Genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014576,0.00046379,0.0003900539,0.0002470022,0.0001297819,0.0005276934,0.0002073455,0.000272077,0.0003797624],"category_scores_gemma":[0.0001961826,0.0001301209,0.0002463693,0.0001539754,0.0002875976,0.0003335493,0.0004955787,0.0003965489,0.0001486664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001732564,"about_ca_system_score_gemma":0.0001492966,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003218542,"about_ca_topic_score_gemma":0.0003357015,"domain_scores_codex":[0.9998704,0.00001857706,0.000009872873,0.00002851981,0.00004014286,0.00003238385],"domain_scores_gemma":[0.9998953,0.00002183577,0.00003034116,0.00001855452,0.00001100665,0.00002285728],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000685688,0.00001150375,0.001821087,0.00002942096,0.000003998204,0.00008907538,0.00003199904,0.00005516277,0.9942425,0.0001052475,0.000008038817,0.00353321],"study_design_scores_gemma":[0.00001293738,0.0004308315,0.03866476,0.00001201628,0.00003144117,0.0018514,0.0001218521,0.001694811,0.955021,0.0002660243,0.001874917,0.00001801566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962686,0.0009253626,0.002285281,0.00003610551,0.000003541249,0.000008794072,0.00003664095,0.00003541372,0.0004000707],"genre_scores_gemma":[0.9968651,0.0004210866,0.001951015,0.00004119133,0.000005085351,0.000008604013,0.00009452161,0.00001142741,0.0006018482],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005276934,"threshold_uncertainty_score":0.001270473,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02002897654114238,"score_gpt":0.2881397110856623,"score_spread":0.2681107345445199,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}