{"id":"W4411224032","doi":"10.1007/s10126-025-10476-3","title":"Transcription Dynamics and DNA Methylation Responses to Growth Modification","year":2025,"lang":"en","type":"article","venue":"Marine Biotechnology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Genomics; University of Victoria; Fisheries and Oceans Canada","funders":"Fisheries and Oceans Canada; Genome British Columbia; Genome Canada; McGill University","keywords":"Biology; DNA methylation; Transcription (linguistics); DNA; Methylation; Epigenetics; Genetics; Dynamics (music); Computational biology; Transcription factor; Cell biology; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001465286,0.0001711116,0.0001911473,0.0001928219,0.0001467795,0.0002683109,0.0001525186,0.0001922761,0.001137045],"category_scores_gemma":[0.0002722717,0.0001747053,0.0002015792,0.0001518153,0.0003160115,0.0002236719,0.0002693494,0.000480496,0.0002472439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004076176,"about_ca_system_score_gemma":0.0002372577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003188878,"about_ca_topic_score_gemma":0.005920813,"domain_scores_codex":[0.9998472,0.00001541415,0.000007904619,0.00008159182,0.00002551328,0.00002243797],"domain_scores_gemma":[0.9998115,0.00004528967,0.00005192669,0.00002423018,0.00004105433,0.00002606165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003900994,0.000002051425,0.0009909718,0.000007871817,0.000002554316,0.000005340992,0.00002272966,0.00002851177,0.998271,0.00002861125,0.000005986364,0.0005953161],"study_design_scores_gemma":[0.000006098111,0.0001900999,0.1555177,0.00000808287,0.00002466346,0.00009129045,0.0001743611,0.001937157,0.8403442,0.0002040552,0.001484774,0.00001750188],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923958,0.0007252836,0.004633058,0.00009055827,0.00001472349,0.00001036894,0.0007334398,0.0000573353,0.001339555],"genre_scores_gemma":[0.9942877,0.0003407181,0.002210077,0.00004968657,0.000005715713,0.0000273943,0.0008178754,0.00002855606,0.00223235],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003188878,"threshold_uncertainty_score":0.006340623,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009555116456869017,"score_gpt":0.2623981220610243,"score_spread":0.2528430056041552,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}