{"id":"W4411275722","doi":"10.1016/j.jbc.2025.109974","title":"Abstract 2271 Molecular characterization of type VI secretion effector-immunity pairs from Salmonella Typhimurium","year":2025,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Effector; Salmonella; Secretion; Immunity; Biology; Microbiology; Type three secretion system; Immune system; Chemistry; Cell biology; Immunology; Biochemistry; Bacteria; Genetics; Gene; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001385714,0.0005698701,0.0002964535,0.0004988625,0.0001547818,0.0002577908,0.0002117708,0.0002702482,0.00165517],"category_scores_gemma":[0.0003630198,0.0001771112,0.0006067823,0.0003307885,0.000174267,0.0001234047,0.0002011389,0.0004292359,0.001148803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002041445,"about_ca_system_score_gemma":0.0002082096,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001035497,"about_ca_topic_score_gemma":0.0009032459,"domain_scores_codex":[0.9998416,0.00003070372,0.00002118271,0.0000268298,0.00003962998,0.00004012295],"domain_scores_gemma":[0.9996436,0.00005850843,0.00007222037,0.00003105356,0.00007304611,0.0001216032],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003687401,0.00008603718,0.002392931,0.00005814847,0.00001342951,0.0001794426,0.00003257512,0.00005718923,0.9957624,0.00005227928,0.00005953367,0.0009373458],"study_design_scores_gemma":[0.0001127912,0.003461688,0.1720057,0.00004862688,0.0001679461,0.003330402,0.0004911628,0.002017608,0.8113642,0.0001407182,0.006825041,0.0000341694],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.9962338,0.0003363299,0.001145716,0.00007244133,0.00002687035,0.00003558429,0.001302167,0.00002168639,0.0008254956],"genre_scores_gemma":[0.9794089,0.000221416,0.003946124,0.0001541992,0.00002409171,0.00003705919,0.01363843,0.00004065563,0.002529185],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.00165517,"threshold_uncertainty_score":0.005537093,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01867971133582284,"score_gpt":0.2396615571835276,"score_spread":0.2209818458477047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}