{"id":"W4411299228","doi":"10.1099/jgv.0.002077","title":"Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)","year":2025,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Science and Technology Directorate; Battelle; Agricultural Research Service; U.S. Department of Health and Human Services; National Institutes of Health; National Institute of Food and Agriculture; Maine Agricultural and Forest Experiment Station; U.S. Department of Defense; World Health Organization; U.S. Department of Homeland Security; Agencia Nacional de Investigación y Desarrollo; U.S. Department of Agriculture","keywords":"Phylum; Biology; Taxonomy (biology); RNA; Taxon; Virus classification; Evolutionary biology; RNA polymerase; Phylogenetics; Genetics; Virology; Zoology; Genome; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004542378,0.0005170666,0.0004171493,0.002903714,0.001380782,0.002326791,0.0008662612,0.001336006,0.004040602],"category_scores_gemma":[0.00514748,0.0002561461,0.0004771278,0.001658343,0.001174095,0.001731064,0.001820751,0.002475376,0.002503649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001637313,"about_ca_system_score_gemma":0.004379186,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006673434,"about_ca_topic_score_gemma":0.008429578,"domain_scores_codex":[0.99814,0.0004146481,0.0001784076,0.0001464792,0.0008157156,0.000304874],"domain_scores_gemma":[0.9943183,0.0004735544,0.0008062438,0.0003866558,0.003251424,0.0007638038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003913406,0.0000786296,0.01552259,0.000897602,0.00003169125,0.0005932403,0.001128154,0.0004886199,0.01402584,0.008601883,0.3150609,0.6431796],"study_design_scores_gemma":[0.000005161337,0.00008264711,0.008177466,0.0002103664,0.00001241599,0.0005092447,0.0002610179,0.0001374466,0.0008795008,0.0008412814,0.9888642,0.00001924764],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"editorial","genre_gemma":"empirical","genre_scores_codex":[0.1581411,0.1635402,0.05509714,0.1059982,0.2924505,0.00197785,0.01729065,0.002190154,0.2033144],"genre_scores_gemma":[0.3137773,0.1272419,0.1600459,0.05780413,0.05004461,0.001544876,0.05386933,0.0008809107,0.234791],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.006673434,"threshold_uncertainty_score":0.0240227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02354599146275955,"score_gpt":0.30874095445345,"score_spread":0.2851949629906904,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}