{"id":"W4411310158","doi":"10.1007/978-1-0716-4615-1_21","title":"Chromatin Immunoprecipitation (ChIP)–Quantitative PCR (qPCR) Analysis of Viral Genome–Host Protein Interactions","year":2025,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Chromatin immunoprecipitation; Immunoprecipitation; Genome; ChIP-on-chip; Biology; Chromatin; Host (biology); Virology; Computational biology; Molecular biology; DNA; Genetics; Gene; Gene expression; Chromatin remodeling; Promoter","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002193807,0.002087288,0.001828769,0.001524667,0.001201948,0.001348952,0.001407109,0.0009142891,0.007113102],"category_scores_gemma":[0.001663127,0.001305936,0.002065665,0.002145292,0.001612423,0.0008101561,0.0009995801,0.004420323,0.003193262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001278065,"about_ca_system_score_gemma":0.001416637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001687071,"about_ca_topic_score_gemma":0.004209875,"domain_scores_codex":[0.9954935,0.0007221612,0.0002775695,0.001673701,0.001159917,0.0006731212],"domain_scores_gemma":[0.9982312,0.0007524347,0.0001488656,0.0002471494,0.0005148465,0.0001055966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000158938,0.00009508424,0.0004980261,0.000203038,0.00005392427,0.0000193836,0.00005884998,0.0003707322,0.994808,0.0004930462,0.0004087953,0.002832172],"study_design_scores_gemma":[0.00002835627,0.0001553426,0.003477852,0.00001776214,0.00006213546,0.00004522978,0.00003503783,0.004932775,0.9871955,0.0002936982,0.003726088,0.0000301114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2217472,0.002136346,0.7319865,0.0008442632,0.0007829246,0.00152241,0.02757066,0.003931557,0.009478214],"genre_scores_gemma":[0.3002498,0.002006321,0.6436813,0.001856867,0.0001972586,0.00647546,0.02513797,0.001884134,0.01851085],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007113102,"threshold_uncertainty_score":0.02379566,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0352868042332743,"score_gpt":0.3969641107938938,"score_spread":0.3616773065606195,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}