{"id":"W4411327464","doi":"10.3390/ani15121754","title":"Genome-Wide Association Study for Individual Primal Cut Quality Traits in Canadian Commercial Crossbred Pigs","year":2025,"lang":"en","type":"article","venue":"Animals","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"Agriculture and Agri-Food Canada; Results Driven Agriculture Research","keywords":"Intramuscular fat; Candidate gene; Biology; Quantitative trait locus; Loin; Crossbreed; Genome-wide association study; Genetics; Genetic association; Obesity; Single-nucleotide polymorphism; Gene; Genotype; Food science; Endocrinology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007629552,0.0004489143,0.0004265052,0.001056932,0.001187013,0.0006256406,0.0005033409,0.000414962,0.001726268],"category_scores_gemma":[0.0007061663,0.0002271365,0.0007265066,0.001957848,0.0004887487,0.00009704579,0.0003648267,0.0005396414,0.0001336852],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002276609,"about_ca_system_score_gemma":0.003277684,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7675064,"about_ca_topic_score_gemma":0.8498371,"domain_scores_codex":[0.9993312,0.0000592206,0.00002614068,0.0002522529,0.0002004252,0.0001308095],"domain_scores_gemma":[0.9994707,0.00008440724,0.000104492,0.00004731138,0.0001531212,0.0001400411],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007375698,0.0000395057,0.9677059,0.00007388701,0.0008639737,0.0009415577,0.0005102713,0.0002403015,0.01815906,0.0002332724,0.0008214171,0.009673302],"study_design_scores_gemma":[0.00001282488,0.00001574005,0.9988757,0.000007084368,0.0001033185,0.0001072231,0.000070576,0.0001535848,0.0001210117,0.00001238173,0.0005157904,0.000004646135],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966688,0.000602006,0.0003992141,0.00008463054,0.00001069356,0.00001233055,0.001193924,0.00001571014,0.001012729],"genre_scores_gemma":[0.9963981,0.0003438296,0.0007605975,0.00005658558,0.000006014454,0.00001306885,0.001212084,0.0000142918,0.001195361],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2324936,"threshold_uncertainty_score":0.4677255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02424009333800395,"score_gpt":0.3137510676215903,"score_spread":0.2895109742835864,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}