{"id":"W4411327464","doi":"10.3390/ani15121754","title":"Genome-Wide Association Study for Individual Primal Cut Quality Traits in Canadian Commercial Crossbred Pigs","year":2025,"lang":"en","type":"article","venue":"Animals","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"Agriculture and Agri-Food Canada; Results Driven Agriculture Research","keywords":"Intramuscular fat; Candidate gene; Biology; Quantitative trait locus; Loin; Crossbreed; Genome-wide association study; Genetics; Genetic association; Obesity; Single-nucleotide polymorphism; Gene; Genotype; Food science; Endocrinology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008641572,0.0001415938,0.0002045395,0.00007666454,0.0001582642,0.00004535302,0.000246611,0.0001999091,0.00002019599],"category_scores_gemma":[0.0006033516,0.0001585566,0.00006935162,0.000117761,0.0000283351,0.000003118849,0.0000567053,0.0001134188,0.00000372297],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001006046,"about_ca_system_score_gemma":0.0006405906,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01107591,"about_ca_topic_score_gemma":0.3125261,"domain_scores_codex":[0.9986348,0.0001656466,0.0003279963,0.0003322675,0.0001186006,0.0004206629],"domain_scores_gemma":[0.9994516,0.0001108581,0.00008789395,0.000159398,0.00009122155,0.00009904072],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001443997,0.0001988095,0.9898119,0.0000191058,0.000128874,3.820271e-7,0.0007480119,0.00003837654,0.004370439,0.001378982,0.002182054,0.00097867],"study_design_scores_gemma":[0.00122399,0.000424609,0.9831078,0.000004483148,0.00003225732,1.272391e-7,0.0003007246,5.942985e-7,0.0008759999,0.0009553624,0.01291203,0.0001620149],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995639,0.0002039234,0.0002827017,0.0005632712,0.0001301118,0.0008228677,0.0002548621,0.000007835598,0.002095406],"genre_scores_gemma":[0.9965373,0.000002897854,0.001284152,0.0009747485,0.0001343772,0.0001046119,0.000141439,0.00001253863,0.0008079668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3014502,"threshold_uncertainty_score":0.9955094,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02424009333800395,"score_gpt":0.3137510676215903,"score_spread":0.2895109742835864,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}