{"id":"W4411345061","doi":"10.1094/phytofr-12-24-0136-r","title":"Survey of Maize Differential Gene Expression Upon Environmental Exposure to the Tar Spot Pathogen, <i>Phyllachora maydis</i>","year":2025,"lang":"en","type":"article","venue":"PhytoFrontiers™","topic":"Genetics and Plant Breeding","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agricultural Research Service; U.S. Department of Agriculture; National Institute of Food and Agriculture; National Science Foundation","keywords":"Pathogen; Biology; tar (computing); Differential (mechanical device); Gene; Genetics; Engineering; Computer science","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002424674,0.0001488849,0.000188649,0.0000130682,0.0001765416,0.00003728912,0.0003567305,0.00007508112,0.0002038627],"category_scores_gemma":[0.00001885521,0.00005490498,0.00008369356,0.0001594582,0.00002667672,0.00002349199,0.0001666225,0.00009177489,0.00001357479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001827216,"about_ca_system_score_gemma":0.000004782238,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002213849,"about_ca_topic_score_gemma":0.000371727,"domain_scores_codex":[0.9989227,0.0001333434,0.0002124428,0.0002770149,0.0002113431,0.0002431423],"domain_scores_gemma":[0.9996508,0.00008059371,0.00007281804,0.0001049634,0.00001799205,0.00007279498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007728895,0.00005675141,0.0653473,0.00000417775,0.00001267164,8.848108e-7,0.00005329169,0.00003421833,0.9105425,0.000003465444,0.01044061,0.01342679],"study_design_scores_gemma":[0.0001262716,0.0001292541,0.8761832,0.00002131024,0.00001536207,7.896069e-7,0.00013589,0.00005124068,0.1056342,0.00003790889,0.01753001,0.000134671],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967691,0.000829446,0.0001951808,0.0003298395,0.0004474552,0.0002373282,0.00090519,0.00001303555,0.0002734313],"genre_scores_gemma":[0.9984761,0.00009712718,0.0001805168,0.0001283582,0.0001510174,0.00001258481,0.0002802855,0.000001270148,0.0006727077],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8108358,"threshold_uncertainty_score":0.223896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01449197337763408,"score_gpt":0.1885401346874526,"score_spread":0.1740481613098185,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}