{"id":"W4411374577","doi":"10.1128/mra.01317-24","title":"Hybrid reference genome assemblies for <i>Leishmania (Viannia) braziliensis</i> , a primary agent of mucocutaneous leishmaniasis","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Wellcome Trust","keywords":"Mucocutaneous zone; Leishmania braziliensis; Leishmaniasis; Leishmania; Biology; Infectivity; Genome; Virology; Cutaneous leishmaniasis; Immunology; Medicine; Gene; Parasite hosting; Genetics; Disease; Pathology; Virus; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006790491,0.0004791587,0.001246931,0.0005538131,0.0003463206,0.00004064002,0.0005848033,0.0002336121,0.00007053072],"category_scores_gemma":[0.0003591495,0.0004386494,0.000310461,0.0004487273,0.0006451635,0.00008837735,0.0005937585,0.0003949278,0.00006228857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000397027,"about_ca_system_score_gemma":0.0003405252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003490725,"about_ca_topic_score_gemma":0.00001981457,"domain_scores_codex":[0.9965898,0.000175459,0.0009611084,0.0009741765,0.0002794154,0.001020047],"domain_scores_gemma":[0.9974681,0.0003487547,0.0003322864,0.0009299759,0.0007760795,0.0001448714],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001502145,0.0006015716,0.008608575,0.0008294098,0.001139843,0.00008166091,0.0002534934,0.000008646392,0.9111594,0.0001004483,0.07136403,0.004350778],"study_design_scores_gemma":[0.003218474,0.001382096,0.004881709,0.0003320466,0.0003471785,0.0002752815,0.0004579181,0.00001548929,0.01847431,0.00009897648,0.9701392,0.0003772983],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9574715,0.004136608,0.0006409436,0.002845358,0.0002545619,0.003025614,0.003114246,0.0001775976,0.0283335],"genre_scores_gemma":[0.9277763,0.001526376,0.004322426,0.01217979,0.0002694967,0.0007668989,0.01026222,0.0001512769,0.04274525],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8987752,"threshold_uncertainty_score":0.9998065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0250173564562409,"score_gpt":0.2949866911723587,"score_spread":0.2699693347161178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}