{"id":"W4411511258","doi":"10.1155/ijm/7747795","title":"Differential Impact of Simultaneous or Sequential Coinfections With <i>Borrelia afzelii</i> and Tick‐Borne Encephalitis Virus on the <i>Ixodes ricinus</i> Microbiota","year":2025,"lang":"en","type":"article","venue":"International Journal of Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"European Regional Development Fund; Collectivité de Corse; Junta de Castilla y León; Agence Nationale de la Recherche","keywords":"Ixodes ricinus; Borrelia afzelii; Virology; Ricinus; Tick-borne encephalitis; Biology; Microbiology; Borrelia; Tick-borne encephalitis virus; Encephalitis; Tick; Virus; Borrelia burgdorferi; Immunology; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001566553,0.0002834575,0.0004776855,0.0003499878,0.0001399831,0.00003681559,0.000491938,0.0002186969,0.001063819],"category_scores_gemma":[0.0002969618,0.0001592717,0.0002730601,0.0001792717,0.0007682598,0.00007533043,0.000107393,0.0004798464,0.00002601727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001693527,"about_ca_system_score_gemma":0.0004140198,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004606184,"about_ca_topic_score_gemma":0.000253749,"domain_scores_codex":[0.9984279,0.0003459237,0.0006316721,0.0002552509,0.00005313015,0.0002861243],"domain_scores_gemma":[0.9972645,0.001220063,0.0005740133,0.0002047572,0.0007031046,0.00003354859],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003203582,0.0005575941,0.004774308,0.00001069593,0.003011458,0.00008570022,0.0001642887,0.0003738081,0.9811641,0.0004951222,0.005020399,0.001138933],"study_design_scores_gemma":[0.01052408,0.006693649,0.02127556,0.0007562868,0.001109277,0.01498338,0.0004325448,0.00003062191,0.9288123,0.00039665,0.01430559,0.000680073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953196,0.0005252782,0.000498074,0.0005231828,0.001865355,0.0002009349,0.000689886,0.00002179791,0.000355907],"genre_scores_gemma":[0.998585,0.0003740065,0.00002527195,0.0004249636,0.000105429,0.000005556746,0.00006231777,0.00001700378,0.0004003892],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05235182,"threshold_uncertainty_score":0.9998493,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008057382426850866,"score_gpt":0.268925480742873,"score_spread":0.2608680983160221,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}