{"id":"W4411675342","doi":"10.1371/journal.ppat.1013012","title":"Natural self-attenuation of pathogenic viruses by deleting the silencing suppressor coding sequence for long-term plant-virus coexistence","year":2025,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Proteases; Genetics; RNA silencing; Virology; RNA; RNA virus; Protease; Virus; RNA interference; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004747955,0.0001941153,0.0002746066,0.00002426796,0.0006252129,0.0000664275,0.0005135214,0.00007812768,0.00001592657],"category_scores_gemma":[0.0007129549,0.00007604654,0.0001288538,0.0003410237,0.0001180552,0.0001315519,0.0001885583,0.0001800381,0.00000570941],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006490755,"about_ca_system_score_gemma":0.0000268312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007025399,"about_ca_topic_score_gemma":0.000317266,"domain_scores_codex":[0.9982675,0.0001634968,0.0003526035,0.0003767384,0.0003695545,0.0004701042],"domain_scores_gemma":[0.9974629,0.001987893,0.0001869803,0.0001034552,0.0002089239,0.0000499034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005211751,0.000064514,0.008486208,0.00008549666,0.00007303192,0.0000055973,0.000225919,0.00000266521,0.9883935,0.00004821098,0.0006122994,0.001950375],"study_design_scores_gemma":[0.000240974,0.0001496251,0.04649872,0.0003240181,0.0001171776,0.00000818432,0.0004711359,0.001914086,0.9494482,0.00006998803,0.0004668868,0.0002909572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927163,0.00114861,0.00002389472,0.0004092909,0.0001039518,0.0006953611,0.004762665,0.00008503237,0.00005485463],"genre_scores_gemma":[0.9985908,0.0004817519,0.0001526641,0.0002570581,0.00008661937,0.0001393609,0.0002307226,0.000001936063,0.00005903572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03894532,"threshold_uncertainty_score":0.4808695,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06373147119593837,"score_gpt":0.2923486385455834,"score_spread":0.228617167349645,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}