{"id":"W4411705411","doi":"10.1111/mec.70004","title":"Genome Architecture and Speciation in Plants and Animals","year":2025,"lang":"en","type":"review","venue":"Molecular Ecology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Australian Research Council; Research Foundation for the State University of New York; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Genetic algorithm; Genome; Evolutionary biology; Synteny; Plant evolution; Genome evolution; Transposable element; Ecology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000643708,0.0002847117,0.0005936391,0.001560114,0.0004378364,0.001301976,0.0005048236,0.0009946456,0.001757993],"category_scores_gemma":[0.001048359,0.000180368,0.0004317354,0.002093781,0.0008614316,0.001719792,0.0009134071,0.0007163771,0.0004595453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006349597,"about_ca_system_score_gemma":0.0005359678,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008862262,"about_ca_topic_score_gemma":0.001206254,"domain_scores_codex":[0.9996902,0.00006241217,0.00003413749,0.0001124192,0.00006543809,0.0000355368],"domain_scores_gemma":[0.9995738,0.0001748594,0.0001281135,0.00002644149,0.00006188136,0.00003496674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003992232,0.00002614304,0.01976855,0.02302064,0.001121041,0.002534073,0.003951443,0.004998095,0.1203317,0.1403894,0.01480063,0.668659],"study_design_scores_gemma":[0.0000148543,0.0002207207,0.07992291,0.002215273,0.0004799761,0.003590966,0.001358692,0.0007630409,0.009121694,0.06000494,0.84218,0.0001270359],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.03871861,0.9408954,0.007150872,0.00321634,0.0004878324,0.00001247852,0.0005966711,0.0001359955,0.008785746],"genre_scores_gemma":[0.2780859,0.7045795,0.008500228,0.002528526,0.0006342563,0.00003045101,0.001825908,0.00009752875,0.003717641],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.001757993,"threshold_uncertainty_score":0.005881011,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01366364334667058,"score_gpt":0.2440183138274149,"score_spread":0.2303546704807443,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}