{"id":"W4411722783","doi":"10.1139/cjm-2025-0061","title":"RNA-seq analysis of transcription patterns during infection of <i>Mesorhizobium japonicum</i> by phage Cp1R7A-A1","year":2025,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Transcription (linguistics); Genetics; RNA; Gene expression; Transfer RNA; Molecular biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001519623,0.0003359192,0.0005207158,0.0003784869,0.0004270666,0.0004627052,0.0001879683,0.0003149801,0.001155717],"category_scores_gemma":[0.0001696325,0.0002135979,0.000476644,0.0004594132,0.0002423599,0.0001781206,0.0002112777,0.0006318911,0.0004838232],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003218048,"about_ca_system_score_gemma":0.0003788446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003541596,"about_ca_topic_score_gemma":0.006967774,"domain_scores_codex":[0.9997975,0.00001106463,0.000009321566,0.0000950613,0.00004472539,0.00004238789],"domain_scores_gemma":[0.9998573,0.00004737444,0.00002596467,0.000005897067,0.00003154768,0.00003188186],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001083949,0.000008454808,0.0009326568,0.00006923286,0.000006801454,0.00002820924,0.00005561489,0.00006618164,0.9978324,0.00002477014,0.0001090317,0.0007583466],"study_design_scores_gemma":[0.00004205772,0.0004656885,0.255792,0.00007656692,0.0001315996,0.0004544069,0.000919781,0.00995908,0.7215374,0.0002257608,0.01030791,0.00008779729],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9687185,0.001477815,0.007064038,0.0001842388,0.0001148032,0.00007863863,0.01909239,0.0003209801,0.00294873],"genre_scores_gemma":[0.9460203,0.001200888,0.01898462,0.0006260825,0.00005464982,0.000316938,0.02590481,0.0002235268,0.006668107],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003541596,"threshold_uncertainty_score":0.007041931,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006157593304903494,"score_gpt":0.1907753133466306,"score_spread":0.1846177200417272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}