{"id":"W4411798838","doi":"10.1371/journal.pone.0327489","title":"Differentiating bacteria by their unique surface interactions","year":2025,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Acinetobacter baumannii; Bacteria; Staphylococcus aureus; Enterococcus faecalis; Microbiology; Biofilm; Bacterial cell structure; Antibiotic resistance; Biology; Pseudomonas aeruginosa; Antibiotics; Chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009174696,0.00008678634,0.0001029931,0.00001761318,0.00009445065,0.00006207383,0.0001183583,0.00006014232,0.0001216765],"category_scores_gemma":[0.0001931087,0.00008715925,0.00003706512,0.00007062026,0.0000233826,0.000004484891,0.00008262633,0.00007711572,0.000009055428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000147745,"about_ca_system_score_gemma":0.00002746036,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002153275,"about_ca_topic_score_gemma":0.00004754625,"domain_scores_codex":[0.999372,0.00007322719,0.0001712395,0.0002252005,0.00004266754,0.0001156513],"domain_scores_gemma":[0.9995194,0.00002507975,0.00005438476,0.0002769277,0.00009134237,0.00003284609],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001184548,0.0003374037,0.007100774,0.00002827221,0.00008765081,4.086917e-8,0.00002829696,3.495823e-7,0.9909373,0.00003695145,0.001172873,0.0002582743],"study_design_scores_gemma":[0.0001330601,0.00002040069,0.00820273,0.00006085612,0.0000225293,2.209599e-7,0.00005653925,0.0001455144,0.9890631,0.00005148379,0.00215197,0.00009159585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969522,0.00004634436,0.000732009,0.0004519145,0.0001037791,0.0001247912,0.00004366316,0.0000345958,0.001510664],"genre_scores_gemma":[0.9912657,0.00002814046,0.001258979,0.0001766845,0.00005170638,0.00001085983,0.0003930327,0.000009469974,0.006805491],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005686603,"threshold_uncertainty_score":0.3554251,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02842128753588921,"score_gpt":0.2491209275804934,"score_spread":0.2206996400446042,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}