{"id":"W4411798838","doi":"10.1371/journal.pone.0327489","title":"Differentiating bacteria by their unique surface interactions","year":2025,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Acinetobacter baumannii; Bacteria; Staphylococcus aureus; Enterococcus faecalis; Microbiology; Biofilm; Bacterial cell structure; Antibiotic resistance; Biology; Pseudomonas aeruginosa; Antibiotics; Chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003942705,0.0004112963,0.0003386233,0.0006102737,0.0001814062,0.0006687852,0.0002430509,0.000467102,0.0005570936],"category_scores_gemma":[0.0007223365,0.0002613672,0.0002201204,0.0003546941,0.0003120441,0.0005939431,0.0006897827,0.0007352344,0.0003764347],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001610091,"about_ca_system_score_gemma":0.0001700385,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002101504,"about_ca_topic_score_gemma":0.0005185859,"domain_scores_codex":[0.999572,0.00006492414,0.00002956115,0.00008492046,0.0001963926,0.00005221475],"domain_scores_gemma":[0.9994078,0.000162455,0.0001809726,0.00005146158,0.0001233267,0.00007408658],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000256572,0.000006493848,0.001513772,0.00003420303,0.000004867472,0.00001774843,0.00002478653,0.00006272718,0.9942404,0.00009091073,0.00001957742,0.003959019],"study_design_scores_gemma":[0.000003688111,0.0001653289,0.01671677,0.00001583579,0.00002410654,0.0003910351,0.0001242481,0.002690835,0.9775349,0.0002676059,0.002046185,0.00001947213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9265972,0.001573074,0.06861968,0.0002214146,0.00004078433,0.00005058127,0.0004084036,0.0002653506,0.002223592],"genre_scores_gemma":[0.9357417,0.001439383,0.06114054,0.0001276762,0.00002205945,0.00007741503,0.0003838231,0.00004685904,0.001020603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006687852,"threshold_uncertainty_score":0.002085149,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02842128753588921,"score_gpt":0.2491209275804934,"score_spread":0.2206996400446042,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}