{"id":"W4411882220","doi":"10.1038/s41467-025-60699-0","title":"Prevalent chromosome fusion in Vibrio cholerae O1","year":2025,"lang":"en","type":"article","venue":"Nature Communications","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University Health Centre; McGill University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Science Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Vibrio cholerae; Biology; Chromosome; Vibrionaceae; Genetics; Cholera; Virulence; Pathogen; Phenotype; El Tor; Homologous chromosome; Microbiology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000211311,0.0001729762,0.0002602839,0.0006335144,0.0003765174,0.0004779226,0.0001459682,0.000440308,0.00150309],"category_scores_gemma":[0.0007088029,0.0001445539,0.0002761026,0.0006228653,0.0003992821,0.0002423673,0.0005453829,0.0003198668,0.0003166539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003808177,"about_ca_system_score_gemma":0.0002097961,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002406602,"about_ca_topic_score_gemma":0.002529716,"domain_scores_codex":[0.9996237,0.00003630333,0.00002293917,0.0001268092,0.0001221067,0.00006802604],"domain_scores_gemma":[0.9996247,0.0000951136,0.0001607469,0.00003843244,0.00004152456,0.00003953552],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003214196,0.00002737622,0.03238722,0.00008247185,0.00002707398,0.0006720025,0.0003920507,0.0002138223,0.9609827,0.0001251325,0.00006871331,0.004700129],"study_design_scores_gemma":[0.00002422734,0.0007265332,0.6239123,0.00003525201,0.00007603253,0.00847831,0.001437743,0.0009213332,0.3600986,0.0003835993,0.003855657,0.00005036536],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978655,0.0005026018,0.0007465759,0.00003002542,0.000005156485,0.000007218592,0.0002898316,0.00001873543,0.0005343973],"genre_scores_gemma":[0.9979967,0.0001999967,0.0006488717,0.00002869267,0.000002528474,0.000005634909,0.0006271495,0.000008032227,0.0004823318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002406602,"threshold_uncertainty_score":0.005028307,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01411310498517846,"score_gpt":0.3390348811278956,"score_spread":0.3249217761427171,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}