{"id":"W4411882220","doi":"10.1038/s41467-025-60699-0","title":"Prevalent chromosome fusion in Vibrio cholerae O1","year":2025,"lang":"en","type":"article","venue":"Nature Communications","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University Health Centre; McGill University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Science Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Vibrio cholerae; Biology; Chromosome; Vibrionaceae; Genetics; Cholera; Virulence; Pathogen; Phenotype; El Tor; Homologous chromosome; Microbiology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001805475,0.00009739179,0.0001083244,0.00009587505,0.0001558018,0.00002455909,0.0008257721,0.0002259105,0.00001132512],"category_scores_gemma":[0.000306072,0.00009407874,0.00005173791,0.000265437,0.0001154863,0.000004251771,0.001235754,0.0004646436,0.000009884753],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004726623,"about_ca_system_score_gemma":0.0001000719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000175032,"about_ca_topic_score_gemma":0.0008712721,"domain_scores_codex":[0.9992363,0.0001344089,0.0001603272,0.0002042291,0.00009066639,0.0001740166],"domain_scores_gemma":[0.9983127,0.00003762701,0.00003379994,0.001478378,0.0001068939,0.0000306242],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004649663,0.0002659883,0.01632659,0.00003833054,0.0000764955,8.76402e-7,0.00009135182,0.000008669625,0.9594097,0.002077434,0.01763628,0.004021815],"study_design_scores_gemma":[0.000717083,0.00006152733,0.2399084,0.00009529864,0.00001247788,0.000001929109,0.00005724184,0.00008926403,0.04218487,0.0001489369,0.7165554,0.0001676057],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9088073,0.04878465,0.00006552805,0.0164314,0.0002535511,0.0006805052,0.00005149844,0.00003708265,0.0248885],"genre_scores_gemma":[0.9892884,0.00747761,0.0009753338,0.0004979899,0.00004043207,0.0001015111,0.0002064389,0.000008285358,0.001403953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9172248,"threshold_uncertainty_score":0.383642,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01411310498517846,"score_gpt":0.3390348811278956,"score_spread":0.3249217761427171,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}