{"id":"W4411959864","doi":"10.1128/mra.00204-25","title":"Draft genome sequences of multiple <i>Salmonella enterica</i> serotypes isolated from eight different animals in Nigeria","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Windsor; University of Guelph; Canadian Institute for Public Safety Research and Treatment","funders":"Canada Research Chairs","keywords":"Salmonella enterica; Serotype; Biology; Salmonella; Genome; Transmission (telecommunications); Human pathogen; Pathogen; Microbiology; Foodborne pathogen; Virology; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002505555,0.0003038276,0.0006815753,0.00005258836,0.0001088312,0.00002000583,0.0005702307,0.0003072341,0.0003542141],"category_scores_gemma":[0.00004808312,0.0001389386,0.0001356138,0.0003725937,0.0002322812,0.00004054817,0.0002540285,0.0001914115,0.00003879975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006329678,"about_ca_system_score_gemma":0.00001232599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005930679,"about_ca_topic_score_gemma":0.0009396542,"domain_scores_codex":[0.9975911,0.0004544527,0.0007199183,0.0006363956,0.00006236745,0.0005357593],"domain_scores_gemma":[0.9990365,0.0004357418,0.0002581985,0.0001501652,0.0000593072,0.0000600782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001982404,0.0001145293,0.3749022,0.000005853027,0.00004874015,0.000004782933,0.0001127187,0.000005594381,0.6239014,0.000002857392,0.0002883445,0.0004146884],"study_design_scores_gemma":[0.001845101,0.001105146,0.6225415,0.0002595256,0.00006438485,0.00001513642,0.001534557,0.00006994126,0.06266949,0.0005572439,0.3085112,0.0008267381],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948577,0.002151402,0.00001330666,0.0005559945,0.0001546165,0.0003214295,0.001565344,0.00003964904,0.0003405508],"genre_scores_gemma":[0.9956255,0.0001702195,0.00003859712,0.000889693,0.00006007217,0.00003101948,0.002900327,0.000001995483,0.000282563],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5612319,"threshold_uncertainty_score":0.5665751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01255526746978606,"score_gpt":0.222372443268909,"score_spread":0.209817175799123,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}