{"id":"W4412066040","doi":"10.1101/2025.07.04.25330042","title":"Genomic epidemiology links azole-resistant <i>Aspergillus fumigatus</i> hospital bioaerosols to chronic respiratory aspergillosis","year":2025,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Indoor Air Quality and Microbial Exposure","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Environment Research Council; Biotechnology and Biological Sciences Research Council; Canadian Institute for Advanced Research; Medical Research Council; Cystic Fibrosis Trust; Wellcome Trust","keywords":"Aspergillus fumigatus; Aspergillosis; Indoor bioaerosol; Azole; Epidemiology; Aspergillus; Microbiology; Allergic bronchopulmonary aspergillosis; Biology; Medicine; Respiratory system; Immunology; Antifungal; Internal medicine; Antibody; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001758748,0.0001630149,0.0002040073,0.0006913396,0.0002623591,0.000614694,0.0001969421,0.0003632307,0.002370604],"category_scores_gemma":[0.001103387,0.0001339705,0.0002510858,0.001118663,0.0003160585,0.0002057032,0.0004806224,0.0003580159,0.0003415963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003642447,"about_ca_system_score_gemma":0.0002561187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01135614,"about_ca_topic_score_gemma":0.01050285,"domain_scores_codex":[0.9995912,0.00006707424,0.00003614703,0.0001685598,0.00005331192,0.00008386311],"domain_scores_gemma":[0.9991261,0.00009777307,0.000500292,0.00006781604,0.0001088442,0.00009914215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002047043,0.00002504999,0.9688201,0.0001098258,0.0001038314,0.0005440029,0.0004932848,0.0002185938,0.02011331,0.0002212072,0.0006279223,0.008518256],"study_design_scores_gemma":[0.000001878982,0.00004401103,0.9973292,0.00002127287,0.00002572042,0.0005926599,0.0003392447,0.0001363025,0.0004340394,0.00005755974,0.001013614,0.00000441992],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967765,0.0004391646,0.0003007441,0.0001343204,0.00000546085,0.000006960276,0.001411,0.00001319568,0.0009126065],"genre_scores_gemma":[0.9982146,0.0002377138,0.0002604349,0.00008270241,0.000007113531,0.000003531429,0.001032178,0.000004821682,0.0001568585],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01135614,"threshold_uncertainty_score":0.02258009,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02398801166540399,"score_gpt":0.273454353471713,"score_spread":0.2494663418063091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}