{"id":"W4412150885","doi":"10.1038/s41586-025-09231-4","title":"Phylogenetically informative proteins from an Early Miocene rhinocerotid","year":2025,"lang":"en","type":"article","venue":"Nature","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Canadian Museum of Nature","funders":"Natural Environment Research Council; National Geographic Society; Novo Nordisk; H. Lundbeck A/S; Lundbeckfonden; Danmarks Grundforskningsfond; Deutsche Forschungsgemeinschaft; National Research Foundation; Natural Sciences and Engineering Research Council of Canada; European Commission; Leverhulme Trust; Wellcome Trust","keywords":"Evolutionary biology; Paleontology; Biology; Computational biology; Geology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001921225,0.0004775677,0.000424758,0.001696032,0.001217125,0.0009121356,0.0003928274,0.0005807489,0.001224237],"category_scores_gemma":[0.0009496133,0.0002183445,0.0004017461,0.001731616,0.0005951787,0.0002749232,0.0007377062,0.0005336521,0.0008963631],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004873059,"about_ca_system_score_gemma":0.0007208356,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01266721,"about_ca_topic_score_gemma":0.04088604,"domain_scores_codex":[0.9997423,0.00001091431,0.00001860969,0.000110908,0.00007015146,0.00004704202],"domain_scores_gemma":[0.9995654,0.00007995881,0.0001290835,0.00006569177,0.00007370719,0.00008615361],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006945778,0.00008281637,0.227448,0.0003801423,0.0001505958,0.001243346,0.001665321,0.001106532,0.7300398,0.0003047112,0.000673006,0.03621136],"study_design_scores_gemma":[0.00001677248,0.0001286809,0.9677154,0.00007456154,0.0001796698,0.003271995,0.0008932312,0.001831693,0.01200004,0.0001988274,0.01365618,0.00003288412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926422,0.001336552,0.001203088,0.00004206467,0.00001468241,0.00001696689,0.003368688,0.00003975992,0.001335957],"genre_scores_gemma":[0.9731693,0.001089329,0.008516755,0.00009939449,0.00002875295,0.00002454295,0.01618533,0.00005773286,0.000828848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01266721,"threshold_uncertainty_score":0.02518696,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00619790791951143,"score_gpt":0.2844417026209999,"score_spread":0.2782437947014885,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}