{"id":"W4412151446","doi":"10.1186/s12915-025-02298-5","title":"A minimized symbiotic gene set from the 1.68 Mb pSymB chromid of Sinorhizobium meliloti reveals auxiliary symbiotic loci","year":2025,"lang":"en","type":"article","venue":"BMC Biology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; U.S. Department of Agriculture","keywords":"Biology; Rhizobia; Symbiosis; Sinorhizobium meliloti; Nitrogen fixation; Genome; Gene; Sinorhizobium; Root nodule; Rhizobium; Rhizobiaceae; Genetics; Botany; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001104365,0.0005588069,0.0003743043,0.0003858575,0.0001671031,0.0002660463,0.0003485424,0.0003078437,0.001078877],"category_scores_gemma":[0.0001841307,0.0002400963,0.0002997326,0.0002592838,0.0002676596,0.00008305554,0.0003365913,0.0006680701,0.0003719912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003962171,"about_ca_system_score_gemma":0.0002993822,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001592574,"about_ca_topic_score_gemma":0.002878099,"domain_scores_codex":[0.9998627,0.0000169192,0.00001172428,0.00003093285,0.00004740696,0.00003034323],"domain_scores_gemma":[0.9998165,0.00004860574,0.00005170532,0.00002228414,0.00001196754,0.00004899616],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005354961,0.000009613166,0.0001235267,0.0000116999,0.000002127854,0.00003813538,0.000007613145,0.00002611971,0.9994336,0.00002090037,0.00000660042,0.0002665189],"study_design_scores_gemma":[0.00006007067,0.0004113044,0.02344381,0.00001575936,0.00005696089,0.000874901,0.00009201148,0.002012891,0.9694598,0.00008650425,0.003468305,0.00001759016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957027,0.0002529543,0.002636244,0.00005576336,0.00001979348,0.00003545509,0.0007953774,0.00008230523,0.0004193481],"genre_scores_gemma":[0.9901072,0.0002001519,0.004178568,0.00006727466,0.000007948904,0.00004890991,0.003365731,0.00008007806,0.001944013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001592574,"threshold_uncertainty_score":0.00360918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02311888717496223,"score_gpt":0.2476826353314532,"score_spread":0.2245637481564909,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}