{"id":"W4412354158","doi":"10.5376/cmb.2024.14.0024","title":"Emerging Trends in Systems Biology: Multi-Omics Integration and Beyond","year":2024,"lang":"en","type":"article","venue":"Computational Molecular Biology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Systems biology; Omics; Data science; Biology; Computational biology; Computer science; Bioinformatics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001973854,0.000153804,0.0001490218,0.0002130753,0.00004093571,0.00004801262,0.00009817107,0.0002266626,0.00000436312],"category_scores_gemma":[0.00001653673,0.0001431948,0.00005470383,0.0001649542,0.0001024932,0.000004785314,0.0000945162,0.0001320111,0.000005726696],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001958722,"about_ca_system_score_gemma":0.00004130127,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001582018,"about_ca_topic_score_gemma":0.0000125328,"domain_scores_codex":[0.999079,0.00007185354,0.0002870403,0.0003264338,0.00003515267,0.000200499],"domain_scores_gemma":[0.9997264,0.00002248297,0.00004644414,0.0001146572,0.00004140665,0.00004859365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00005459357,0.00007104203,0.001649431,0.00007055791,0.0002224906,0.00002153919,0.0003263972,0.03214321,0.2621233,0.4675234,0.0008689061,0.2349251],"study_design_scores_gemma":[0.001063012,0.0003777841,0.001554861,0.00005211559,0.0000303653,0.0001283743,0.0001644128,0.8999187,0.001150406,0.08435398,0.010639,0.0005670341],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1188336,0.008652509,0.8708502,0.0003470684,0.0005355413,0.0001289503,0.00005521303,0.00002320049,0.0005737304],"genre_scores_gemma":[0.9893752,0.00006512187,0.00833944,0.0002852922,0.0001020677,0.00002118357,0.001717314,0.0000170409,0.00007734649],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8705416,"threshold_uncertainty_score":0.5839316,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009088482904857196,"score_gpt":0.2841175448171122,"score_spread":0.275029061912255,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}