{"id":"W4412430993","doi":"10.1158/1078-0432.ccr-24-3726","title":"Molecular Characterization of Residual Muscle-Invasive Bladder Cancer Identifies a Scar-Like Transcriptomic Profile with Favorable Prognosis after Neoadjuvant Therapy","year":2025,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Bladder and Urothelial Cancer Treatments","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; University of British Columbia Hospital","funders":"René Vogels Stichting; Deutsche Forschungsgemeinschaft","keywords":"Bladder cancer; Cystectomy; Medicine; Neoadjuvant therapy; Oncology; Gene expression profiling; Pathology; Internal medicine; Cancer; Gene expression; Biology; Gene; Breast cancer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002781834,0.0001591542,0.0002715315,0.0003708521,0.0001802226,0.0003058909,0.0001456744,0.0001862911,0.000551288],"category_scores_gemma":[0.0006290154,0.00007635086,0.0001662818,0.0002740345,0.0002197957,0.0001090433,0.0001729892,0.0001831707,0.0001441992],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001807245,"about_ca_system_score_gemma":0.0002038025,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007836691,"about_ca_topic_score_gemma":0.001403435,"domain_scores_codex":[0.9998475,0.00002572031,0.00001487468,0.00004509115,0.00003765442,0.00002901674],"domain_scores_gemma":[0.9996322,0.00007119936,0.0001397501,0.00004081611,0.0000621045,0.00005389412],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00144426,0.0001231164,0.6748019,0.0001127331,0.00007066361,0.0003001255,0.0002629023,0.0006220376,0.3057438,0.00004285347,0.0002159469,0.01625965],"study_design_scores_gemma":[0.00001562237,0.0005927529,0.9748065,0.00001445282,0.00006237005,0.0008754311,0.0003483524,0.003392761,0.01936703,0.00004372749,0.0004738418,0.000007027708],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994799,0.00008765085,0.0002030112,0.00001120069,0.000001138139,0.00000589424,0.0001298976,0.000005832124,0.00007537148],"genre_scores_gemma":[0.9987041,0.00005392507,0.0004767336,0.00001569038,0.000002595819,0.00001178502,0.0006211617,0.000002166666,0.0001118373],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007836691,"threshold_uncertainty_score":0.001844227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08110261616488323,"score_gpt":0.4377643613611631,"score_spread":0.3566617451962799,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}