{"id":"W4412470401","doi":"10.3390/agriculture15141532","title":"Metagenomic Profiling of the Grapevine Virome in Canadian Vineyards","year":2025,"lang":"en","type":"article","venue":"Agriculture","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture, Food and Rural Affairs; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency; Université de Sherbrooke; Brock University","funders":"Genome Canada","keywords":"Human virome; Metagenomics; Profiling (computer programming); Biology; Computational biology; Genetics; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001818805,0.00009093249,0.0001512977,0.00002090731,0.0001371663,0.00001635834,0.0003554163,0.00006698116,0.00004173098],"category_scores_gemma":[0.0001275705,0.00002146047,0.00007339622,0.000920806,0.00004557684,0.00003926814,0.0001016701,0.0001570099,0.00000612035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007145198,"about_ca_system_score_gemma":0.00003999256,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.126365,"about_ca_topic_score_gemma":0.7354714,"domain_scores_codex":[0.9992144,0.00006416552,0.0001432725,0.0001531057,0.0001334916,0.0002915558],"domain_scores_gemma":[0.9997274,0.00008052837,0.00003456538,0.0000463105,0.0000550327,0.00005614003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000004021107,0.00001916227,0.02757096,0.0000103522,0.00002241877,0.000002719647,0.00002581997,0.000007623702,0.9648918,0.0008190999,0.005440269,0.001185752],"study_design_scores_gemma":[0.00005756454,0.00001686988,0.9041635,0.00004061197,0.000008250286,0.000001275412,0.0001581629,0.000006525429,0.03630169,0.0002078355,0.05896822,0.00006946595],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.987754,0.0009212301,5.135168e-8,0.006845592,0.0000735139,0.0002817959,0.0002456471,0.00001059615,0.003867502],"genre_scores_gemma":[0.9982119,0.0001206781,0.00001119123,0.000208663,0.00003570754,0.00001918291,0.00002604694,2.184372e-7,0.001366472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9285901,"threshold_uncertainty_score":0.8794526,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01197380969266773,"score_gpt":0.2268007285574691,"score_spread":0.2148269188648014,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}