{"id":"W4412492686","doi":"10.1093/bioinformatics/btaf407","title":"<tt>AdDeam</tt> : a fast and scalable tool for estimating and clustering reference-level damage profiles","year":2025,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Forensic and Genetic Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Novo Nordisk","keywords":"Cluster analysis; Computer science; Scalability; Software; Data mining; Artificial intelligence; Database; Programming language","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003774658,0.006993513,0.00300481,0.007274015,0.002815417,0.005479012,0.007309532,0.003359817,0.04614915],"category_scores_gemma":[0.0201232,0.003094764,0.00451706,0.005117523,0.001426723,0.00481818,0.00685932,0.004185701,0.04042243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001566623,"about_ca_system_score_gemma":0.002490702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008313105,"about_ca_topic_score_gemma":0.01212706,"domain_scores_codex":[0.9966152,0.0003859648,0.0002835001,0.001244226,0.001200932,0.0002701686],"domain_scores_gemma":[0.9946713,0.002166797,0.0006047793,0.001175172,0.001011264,0.0003706524],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001806402,0.0003312537,0.01233095,0.004288125,0.001334306,0.001167699,0.00106608,0.02350974,0.02222114,0.006997677,0.7120963,0.2128503],"study_design_scores_gemma":[0.001205659,0.0003589888,0.01584438,0.0008891983,0.0004340754,0.00120165,0.0004845764,0.3963341,0.0734705,0.05285184,0.4557472,0.001177728],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.00339918,0.0004053795,0.1901172,0.0003418172,0.0003166902,0.0003116002,0.06728789,0.7355033,0.002316906],"genre_scores_gemma":[0.04145191,0.0006426564,0.5459448,0.001197311,0.0002761937,0.002565626,0.2715736,0.1292969,0.007051001],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04614915,"threshold_uncertainty_score":0.1543843,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02853972418611293,"score_gpt":0.2987460566022989,"score_spread":0.2702063324161859,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}