{"id":"W4412494087","doi":"10.1021/acs.jproteome.5c00223","title":"Transcriptome-Proteome Profiling in <i>Burkholderia thailandensis</i> during the Transition from Exponential to Stationary Phase","year":2025,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute","funders":"Division of Molecular and Cellular Biosciences","keywords":"Proteome; Biology; rpoS; Transcriptome; Burkholderia; Biogenesis; Protein biosynthesis; Ribosomal protein; Biochemistry; Gene; Cell biology; Genetics; Gene expression; RNA; Ribosome; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008936314,0.0001915717,0.0001908032,0.00030258,0.0001668145,0.0003538661,0.00005884077,0.0001410093,0.0005586147],"category_scores_gemma":[0.0001276755,0.0000835804,0.0001680564,0.0004315175,0.0001208657,0.000180559,0.0001524718,0.0002418069,0.0003241762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001136906,"about_ca_system_score_gemma":0.0001502718,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007865675,"about_ca_topic_score_gemma":0.0009977197,"domain_scores_codex":[0.9999429,0.000008087544,0.000004075385,0.00001758324,0.00001407976,0.00001329159],"domain_scores_gemma":[0.9999055,0.00001866433,0.00002509817,0.000004162265,0.00002391315,0.00002259429],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001454893,0.000009481031,0.002048333,0.00005428294,0.000004944953,0.00005734171,0.00003749067,0.00003115406,0.9966383,0.000009983271,0.00002257846,0.0009405245],"study_design_scores_gemma":[0.00001629341,0.0007804443,0.4511572,0.00003855935,0.00007069353,0.0009888592,0.0009079615,0.001696385,0.540219,0.0001561876,0.003942405,0.00002596467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994128,0.00106266,0.001161357,0.00005495469,0.000009871757,0.00001672281,0.002757475,0.00004508851,0.0007639031],"genre_scores_gemma":[0.9889791,0.0013291,0.002361938,0.00008990992,0.00001300485,0.00004977415,0.005480781,0.00002050141,0.001675855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007865675,"threshold_uncertainty_score":0.001868725,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04934071496113768,"score_gpt":0.4101377816302273,"score_spread":0.3607970666690896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}