{"id":"W4412784752","doi":"10.1038/s41591-025-03820-6","title":"A systematic nomenclature for mpox viruses causing outbreaks with sustained human-to-human transmission","year":2025,"lang":"en","type":"article","venue":"Nature Medicine","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba","funders":"World Health Organization","keywords":"Nomenclature; Outbreak; Virology; Transmission (telecommunications); Biology; Medicine; Computational biology; Computer science; Zoology; Taxonomy (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002526167,0.001768377,0.001274484,0.005616277,0.003097872,0.003638237,0.001896879,0.001742406,0.003855486],"category_scores_gemma":[0.006543833,0.0003651158,0.002042684,0.003285654,0.00375096,0.002677529,0.002565533,0.005845087,0.003824366],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001635372,"about_ca_system_score_gemma":0.004875871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002637942,"about_ca_topic_score_gemma":0.002516309,"domain_scores_codex":[0.9965876,0.001054448,0.001137217,0.0004239681,0.0003950749,0.0004017069],"domain_scores_gemma":[0.993041,0.001171548,0.002100184,0.001150787,0.001909595,0.0006268339],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001507842,0.0005309496,0.03562625,0.00435552,0.0002601096,0.005078258,0.01082043,0.003711528,0.1282621,0.2397862,0.1241548,0.445906],"study_design_scores_gemma":[0.00009088802,0.00119297,0.03914606,0.001955767,0.0002702272,0.01837912,0.003768383,0.003398727,0.01079053,0.03267028,0.8881006,0.0002365214],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2270222,0.03550166,0.4843314,0.01799359,0.04182261,0.006929943,0.01403074,0.004944839,0.1674229],"genre_scores_gemma":[0.2938572,0.01674686,0.6337387,0.005043318,0.00487085,0.003443173,0.01534942,0.001256992,0.02569352],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.005616277,"threshold_uncertainty_score":0.01335979,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01282964875781278,"score_gpt":0.3347901861369096,"score_spread":0.3219605373790969,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}