{"id":"W4412785794","doi":"10.1186/s12864-025-11877-3","title":"Mitochondrial genome of Quercus chenii: genomic features and evolutionary implications","year":2025,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Natural Science Foundation of China; Nanjing Forestry University","keywords":"Biology; Mitochondrial DNA; Genome; Computational biology; Evolutionary biology; DNA microarray; Genetics; Proteomics; Genomics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001273051,0.0003886831,0.0002487639,0.0009567546,0.0005729973,0.0003514616,0.0002100593,0.0003162662,0.0006166667],"category_scores_gemma":[0.0002056463,0.000118443,0.0003153837,0.0007907253,0.0001957163,0.0001939347,0.0002630617,0.0003142048,0.0002799989],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003986449,"about_ca_system_score_gemma":0.0004113539,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006409221,"about_ca_topic_score_gemma":0.009523732,"domain_scores_codex":[0.9998677,0.000008283515,0.000006965978,0.00006609388,0.00002887951,0.00002219614],"domain_scores_gemma":[0.9998393,0.00002432117,0.00004172042,0.00001520268,0.0000345917,0.0000448679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002962603,0.00003597427,0.0283814,0.0003883524,0.00003902878,0.0005294129,0.0006333301,0.000762817,0.9515163,0.0002692125,0.0002243386,0.01692356],"study_design_scores_gemma":[0.00003896757,0.0002271462,0.9233679,0.0001009446,0.0001690328,0.004251749,0.0006540256,0.003998009,0.04245509,0.0005278849,0.0241389,0.00007037989],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890164,0.00255613,0.002810176,0.00012623,0.00002884048,0.00002938739,0.003864014,0.0001047029,0.001464115],"genre_scores_gemma":[0.977683,0.0008215264,0.006977462,0.00009378051,0.00002695233,0.00003213643,0.01265584,0.00005825075,0.001650994],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006409221,"threshold_uncertainty_score":0.01274383,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009563824410276953,"score_gpt":0.2373880842442041,"score_spread":0.2278242598339272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}