{"id":"W4412785840","doi":"10.1186/s12859-025-06229-7","title":"The BeeBiome data portal provides easy access to bee microbiome information","year":2025,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agriculture and Agri-Food Canada; Université de Lausanne","keywords":"Metagenomics; Data science; Microbiome; Biology; World Wide Web; Honey bee; Resource (disambiguation); Computer science; Computational biology; Ecology; Bioinformatics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006711528,0.0001260933,0.0001184924,0.00004939286,0.0005565973,0.001002313,0.00168666,0.00008521514,0.0001026845],"category_scores_gemma":[0.0003625877,0.00004129274,0.00004354401,0.0008692626,0.00008735895,0.001542364,0.00099537,0.0001240532,0.0002823682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002523941,"about_ca_system_score_gemma":0.00008480049,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001757996,"about_ca_topic_score_gemma":0.001182422,"domain_scores_codex":[0.9987717,0.00003124254,0.0004497593,0.0001033111,0.0002677837,0.000376181],"domain_scores_gemma":[0.9990909,0.0003655578,0.0001045234,0.0001991423,0.0001479119,0.00009203498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001970672,0.00008662013,0.01136279,0.0004067746,0.00007028462,0.000001623789,0.0005167389,0.00005865551,0.00648793,0.005758433,0.1945163,0.7805368],"study_design_scores_gemma":[0.0002464686,0.0001731191,0.1072953,0.00009998487,0.00002375854,0.00001230575,0.001150219,0.03125206,0.001265525,0.0008165847,0.8573046,0.0003600986],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7994678,0.0007145428,0.01206667,0.02606577,0.002468826,0.007977933,0.003935221,0.0008487583,0.1464545],"genre_scores_gemma":[0.941861,0.0004630657,0.02728111,0.0131801,0.001070854,0.0002986457,0.008346657,0.000006546828,0.007492065],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7801767,"threshold_uncertainty_score":0.9665329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06361257686676958,"score_gpt":0.3188988684488425,"score_spread":0.2552862915820729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}