{"id":"W4412788371","doi":"10.1128/msystems.00502-25","title":"Gut microbiota development, antibiotic resistome, and related perinatal factors in early infancy","year":2025,"lang":"en","type":"article","venue":"mSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Gut flora; Bacteroidetes; Biology; Bifidobacterium; Resistome; Bacteroides; Metagenomics; Proteobacteria; Actinobacteria; Antibiotics; Feces; Microbiome; Phylum; Microbiology; Zoology; Physiology; Antibiotic resistance; Lactobacillus; Bacteria; Immunology; Genetics; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000345742,0.0002167343,0.0002745434,0.0004505475,0.000316239,0.0004043911,0.0001613686,0.0002821349,0.0009664315],"category_scores_gemma":[0.00106669,0.0001704237,0.0002385506,0.0004977768,0.0001918113,0.0002866256,0.0003751967,0.000381651,0.0001256583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002320446,"about_ca_system_score_gemma":0.0002360613,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006489259,"about_ca_topic_score_gemma":0.005221852,"domain_scores_codex":[0.9997699,0.00004633965,0.00002074814,0.00005220611,0.0000425428,0.00006831042],"domain_scores_gemma":[0.9996098,0.00006608037,0.0001655631,0.00001979232,0.00005360504,0.00008530053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001454031,0.00002392261,0.9919328,0.00002375005,0.00002489393,0.0002825467,0.0002755395,0.00002989491,0.003246926,0.00003663496,0.00006275012,0.003914956],"study_design_scores_gemma":[2.997224e-7,0.00003414549,0.999401,0.000005239068,0.000005891088,0.0001289102,0.0001354109,0.00003511534,0.0001649007,0.00001007845,0.00007772764,0.000001312694],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989624,0.0005547428,0.00005769679,0.00002267508,0.000003264379,0.000002909757,0.0001340842,0.000002315332,0.0002600002],"genre_scores_gemma":[0.9992959,0.0002812024,0.0000956263,0.0000141786,0.000004401742,0.000006444199,0.0001209003,0.000002056369,0.0001791137],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006489259,"threshold_uncertainty_score":0.01290298,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005604822976237713,"score_gpt":0.2401806475808856,"score_spread":0.2345758246046479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}