{"id":"W4412788371","doi":"10.1128/msystems.00502-25","title":"Gut microbiota development, antibiotic resistome, and related perinatal factors in early infancy","year":2025,"lang":"en","type":"article","venue":"mSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Gut flora; Bacteroidetes; Biology; Bifidobacterium; Resistome; Bacteroides; Metagenomics; Proteobacteria; Actinobacteria; Antibiotics; Feces; Microbiome; Phylum; Microbiology; Zoology; Physiology; Antibiotic resistance; Lactobacillus; Bacteria; Immunology; Genetics; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000178182,0.0001491946,0.0001892774,0.0001359045,0.00009092093,0.00003183282,0.0001175962,0.0002150938,0.000004334923],"category_scores_gemma":[0.00003032991,0.0001432464,0.00003104559,0.0001778287,0.00004765423,0.000003276468,0.0001053187,0.0001124206,0.00001095065],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000310803,"about_ca_system_score_gemma":0.000145111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001757422,"about_ca_topic_score_gemma":0.0002546285,"domain_scores_codex":[0.9989828,0.00006613546,0.0003164748,0.0003349757,0.00004065294,0.0002589106],"domain_scores_gemma":[0.9996386,0.000009035752,0.00006175919,0.0002120034,0.00002703408,0.00005153992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000170485,0.00002044068,0.2963379,0.0001971075,0.00002723647,0.000004709673,0.0002468467,4.301817e-7,0.7023901,0.00006670271,0.0005194698,0.0001720252],"study_design_scores_gemma":[0.0005686742,0.00004192433,0.9209476,0.000188215,0.000005036331,0.00001415949,0.0001038871,0.000001585411,0.03388917,0.000002670683,0.04406501,0.0001720912],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950939,0.001791157,0.000009504738,0.00005029383,0.0003001306,0.0002311079,0.00001096702,0.0000141688,0.002498721],"genre_scores_gemma":[0.9944723,0.00006116583,0.0000793479,0.0000474108,0.00001657109,0.000003026295,0.00006292164,0.00001302681,0.005244246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6685009,"threshold_uncertainty_score":0.5841419,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005604822976237713,"score_gpt":0.2401806475808856,"score_spread":0.2345758246046479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}