{"id":"W4412834651","doi":"10.1093/hr/uhaf198","title":"Telomere-to-telomere genome assembly of yellow-fruited allotetraploid American ginseng ( <i>Panax quinquefolius</i> L <i>.</i> ) provides insights into flavonoid biosynthesis","year":2025,"lang":"en","type":"article","venue":"Horticulture Research","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia; Okanagan University College","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Biology; Ginseng; Genome; Flavonoid; Telomere; Phytochemical; Flavonoid biosynthesis; Retrotransposon; Genomics; Transcriptome; Botany; Traditional medicine; Computational biology; Genetics; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001318647,0.0004362995,0.0007872667,0.0003799502,0.0006477776,0.0001829144,0.001580693,0.0003531948,0.00007036568],"category_scores_gemma":[0.001265704,0.0001873107,0.0002682155,0.005908265,0.001026774,0.0001582177,0.0007581536,0.0009505987,0.0001683155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002038342,"about_ca_system_score_gemma":0.0001778574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002205185,"about_ca_topic_score_gemma":0.005455373,"domain_scores_codex":[0.994234,0.00122164,0.000697848,0.001149442,0.001277349,0.001419749],"domain_scores_gemma":[0.996762,0.001160707,0.0001520795,0.0003934721,0.001004961,0.0005267307],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002074716,0.0002913779,0.00233077,0.00007891135,0.0001719059,0.00005149626,0.0003791012,0.000006315378,0.9726958,0.0003628338,0.002550092,0.02087395],"study_design_scores_gemma":[0.0002822175,0.001322818,0.0777438,0.0002087273,0.00004818467,0.00001135448,0.002633721,0.0000514817,0.823422,0.0003653511,0.09326972,0.0006406665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885842,0.001246366,0.00001144983,0.005396212,0.00007311411,0.001360027,0.00007743628,0.0001334273,0.00311783],"genre_scores_gemma":[0.9966788,0.0006687274,0.0003520781,0.0004885272,0.0001681292,0.0002023444,0.0001444061,0.000007270682,0.001289685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1492738,"threshold_uncertainty_score":0.7638307,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02303182114097335,"score_gpt":0.3028539657250088,"score_spread":0.2798221445840355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}