{"id":"W4412834651","doi":"10.1093/hr/uhaf198","title":"Telomere-to-telomere genome assembly of yellow-fruited allotetraploid American ginseng ( <i>Panax quinquefolius</i> L <i>.</i> ) provides insights into flavonoid biosynthesis","year":2025,"lang":"en","type":"article","venue":"Horticulture Research","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia; Okanagan University College","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Biology; Ginseng; Genome; Flavonoid; Telomere; Phytochemical; Flavonoid biosynthesis; Retrotransposon; Genomics; Transcriptome; Botany; Traditional medicine; Computational biology; Genetics; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001462559,0.0003757829,0.000311179,0.0006275893,0.0003953699,0.0004020435,0.0002213575,0.0003115486,0.001099737],"category_scores_gemma":[0.0002968464,0.0002269486,0.0006908459,0.0006846775,0.0001320687,0.0002941739,0.0003259662,0.0005908501,0.0006323969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003787236,"about_ca_system_score_gemma":0.0004223897,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004899553,"about_ca_topic_score_gemma":0.01049544,"domain_scores_codex":[0.9999045,0.000006763314,0.000006427954,0.00004879901,0.00002068571,0.000012681],"domain_scores_gemma":[0.9998803,0.00002699901,0.00002865817,0.00001618043,0.00002661579,0.00002135399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000137197,0.00001773823,0.001975204,0.00009494677,0.00002495042,0.0001270743,0.0001460053,0.0004889763,0.9877529,0.0002263931,0.0003591324,0.008649507],"study_design_scores_gemma":[0.00008406649,0.0003182692,0.2516312,0.0001074863,0.0003569807,0.0009970702,0.0006090442,0.02645233,0.6514601,0.001228064,0.06664621,0.0001092567],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9046484,0.001870565,0.05559986,0.000259436,0.0001152356,0.0001320084,0.0320603,0.0016154,0.003698807],"genre_scores_gemma":[0.7979051,0.001417744,0.08743605,0.0002275772,0.00003155635,0.0001779929,0.1059174,0.001085188,0.005801379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004899553,"threshold_uncertainty_score":0.009742081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02303182114097335,"score_gpt":0.3028539657250088,"score_spread":0.2798221445840355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}