{"id":"W4412838766","doi":"10.1101/2025.07.31.666798","title":"Surveillance on California dairy farms reveals multiple possible sources of H5N1 transmission","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Chemistry Industry Association of Canada","funders":"National Institute of Allergy and Infectious Diseases; Animal and Plant Health Inspection Service; Emory University; California Dairy Research Foundation; U.S. Department of Agriculture","keywords":"Milking; Influenza A virus subtype H5N1; Transmission (telecommunications); Airborne transmission; Biosecurity; Veterinary medicine; Dairy cattle; Biology; Geography; Animal science; Virus; Virology; Medicine; Coronavirus disease 2019 (COVID-19); Ecology; Infectious disease (medical specialty); Engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006506875,0.0002831803,0.000247141,0.0007456259,0.000702324,0.0007105556,0.0003699187,0.0002989883,0.0007435853],"category_scores_gemma":[0.000659039,0.0002552913,0.0001762458,0.0007284119,0.0003377538,0.0002294759,0.0004512887,0.0002242987,0.0001374229],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00085745,"about_ca_system_score_gemma":0.0006646446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06935086,"about_ca_topic_score_gemma":0.1521004,"domain_scores_codex":[0.9994124,0.00008789503,0.00003133791,0.0002169951,0.0001476044,0.0001038151],"domain_scores_gemma":[0.9994221,0.0001223369,0.0001930972,0.00003928564,0.0001399084,0.00008334085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009714571,0.00004319758,0.9865947,0.00003693849,0.00003888003,0.0001169739,0.0003550633,0.0001660134,0.005702268,0.00002107652,0.0002993272,0.006528391],"study_design_scores_gemma":[0.000006010793,0.0000746977,0.9979505,0.00001462942,0.0000241239,0.00006904325,0.0005277588,0.0002585977,0.0006365323,0.0000120473,0.0004226575,0.000003415104],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982749,0.0001935562,0.00016452,0.00003667026,0.000003294478,0.00001272662,0.0003952176,0.00001043669,0.0009086262],"genre_scores_gemma":[0.997888,0.0002290597,0.0006973236,0.00003883369,0.000005696504,0.00001019893,0.0007263664,0.000002401933,0.0004020853],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06935086,"threshold_uncertainty_score":0.1378944,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02127105878952076,"score_gpt":0.2733708774620754,"score_spread":0.2520998186725547,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}