{"id":"W4412846920","doi":"10.5376/cgg.2025.16.0015","title":"AI-Assisted Genomic Prediction Models in Cotton Breeding","year":2025,"lang":"en","type":"article","venue":"Cotton Genomics and Genetics","topic":"Evolutionary Algorithms and Applications","field":"Computer Science","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"","keywords":"Genomic selection; Biology; Computational biology; Computer science; Biotechnology; Genetics; Genotype; Gene; Single-nucleotide polymorphism","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001688349,0.0001198177,0.0001361342,0.0001657104,0.0001694225,0.0001141593,0.0003474034,0.00008980664,0.000001496339],"category_scores_gemma":[0.000003255014,0.0001357639,0.00003177415,0.0003400044,0.0000485075,0.0001234368,0.0002674416,0.0001301545,0.000003938364],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001193792,"about_ca_system_score_gemma":0.000128523,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002596826,"about_ca_topic_score_gemma":0.00002102761,"domain_scores_codex":[0.999025,0.00002049118,0.0002897076,0.0003741763,0.00008203868,0.0002085252],"domain_scores_gemma":[0.9994537,0.00003191964,0.00005382895,0.0003357279,0.00006159921,0.00006328977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00002051714,0.0003549135,0.01002655,0.0000875706,0.0000740859,0.000006595721,0.00216362,0.08493936,0.1203082,0.5365179,0.004243203,0.2412575],"study_design_scores_gemma":[0.0003672642,0.00003643097,0.05027967,0.00001614684,0.000008680573,0.000007796043,0.00004144886,0.8947236,0.0004628288,0.0433319,0.01059718,0.0001270786],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3645884,0.0027427,0.6288958,0.001837303,0.0002713819,0.0002575751,0.00001919637,0.00005945313,0.001328218],"genre_scores_gemma":[0.9510534,0.00192634,0.04583727,0.0006748435,0.00006930353,0.00004006928,0.00001686728,0.00001020132,0.000371731],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.8097842,"threshold_uncertainty_score":0.5536292,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0153452418143572,"score_gpt":0.2383562376854078,"score_spread":0.2230109958710506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}