{"id":"W4412940655","doi":"10.1099/mgen.0.001415","title":"Plasmid genomic epidemiology of bla NDM carbapenemase-producing Enterobacterales in Canada from 2010 to 2023","year":2025,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Jewish General Hospital; Public Health Agency of Canada","funders":"","keywords":"Plasmid; Replicon; Biology; Genome; Whole genome sequencing; Gene; Genetics; Horizontal gene transfer; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000342873,0.0004764264,0.0003422884,0.00295246,0.001989006,0.001185996,0.0007842641,0.0004127849,0.001310759],"category_scores_gemma":[0.001261041,0.0002754133,0.0004161835,0.005001262,0.0007548986,0.000249475,0.0007435059,0.0004803902,0.0001510889],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0228589,"about_ca_system_score_gemma":0.03611276,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9936641,"about_ca_topic_score_gemma":0.9945533,"domain_scores_codex":[0.9992918,0.00002176832,0.00003070457,0.0001293999,0.000299868,0.0002264733],"domain_scores_gemma":[0.9979348,0.00006005144,0.0002306701,0.00003600065,0.001268425,0.0004700744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002131606,0.00003764838,0.975902,0.0001007917,0.00005520054,0.0003469888,0.001113593,0.0004170476,0.005419553,0.0002040657,0.001607186,0.01458278],"study_design_scores_gemma":[0.000004707714,0.0000319439,0.9954679,0.00004186827,0.00002379282,0.0001949243,0.001362564,0.0004140581,0.0004105545,0.0000229573,0.002008884,0.00001587026],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893366,0.001724263,0.0003482647,0.0003556003,0.00001673675,0.00006511323,0.006208258,0.00003417702,0.001910913],"genre_scores_gemma":[0.9944443,0.0009892611,0.0005045388,0.0001664063,0.000004903838,0.00001847758,0.002844604,0.00001089318,0.001016636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0228589,"threshold_uncertainty_score":0.1658537,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0103192580216874,"score_gpt":0.2312264236200367,"score_spread":0.2209071655983493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}