{"id":"W4412972942","doi":"10.1128/mbio.00564-25","title":"Genomic epidemiology of <i>Histoplasma</i> in Africa","year":2025,"lang":"en","type":"article","venue":"mBio","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Environmental Health Sciences; National Institute of Allergy and Infectious Diseases; National Institute for Health and Care Research","keywords":"Biology; Lineage (genetic); Phylogenetic tree; Histoplasma; Evolutionary biology; Histoplasma capsulatum; Phylogenetics; Population; Genetics; Histoplasmosis; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001994503,0.0002242775,0.0001090018,0.0008856386,0.0002520752,0.0004173896,0.0001537659,0.0001938602,0.0008276212],"category_scores_gemma":[0.0006704447,0.0001000785,0.0001136603,0.001399054,0.0003591157,0.000207918,0.000277354,0.0001904184,0.00006620494],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003179232,"about_ca_system_score_gemma":0.0002155567,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008043328,"about_ca_topic_score_gemma":0.00476073,"domain_scores_codex":[0.9998097,0.00005868911,0.00001039643,0.00006298807,0.00002077808,0.00003760849],"domain_scores_gemma":[0.9996039,0.00006756295,0.0002250604,0.00001052538,0.00005069157,0.00004222646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002218997,0.00003276245,0.928752,0.0001736271,0.0001082318,0.0008882549,0.001760695,0.0006297692,0.04661199,0.000797501,0.0002540511,0.01976921],"study_design_scores_gemma":[0.000006662206,0.0000781965,0.9943786,0.00006941298,0.00002673492,0.0007515962,0.001204976,0.0004782517,0.001242134,0.0001540032,0.001602685,0.000006772157],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988335,0.0002258356,0.0002233325,0.00004799576,0.000001919195,0.000009133179,0.0002685736,0.000002707322,0.0003871454],"genre_scores_gemma":[0.999297,0.0001880502,0.0003081987,0.00001532563,0.000001885438,0.000004014164,0.0001467165,0.000001267981,0.00003746477],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008043328,"threshold_uncertainty_score":0.015993,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04017962920091879,"score_gpt":0.306819895632472,"score_spread":0.2666402664315533,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}