{"id":"W4413022300","doi":"10.3897/neobiota.100.143736","title":"Transparency and reproducibility in invasion science","year":2025,"lang":"en","type":"article","venue":"NeoBiota","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Universität Wien","keywords":"Reproducibility; Transparency (behavior); Computer science; Chemistry; Chromatography; Computer security","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006659768,0.00004787229,0.00005783292,0.00003115095,0.00008691048,0.00002195241,0.0001457109,0.00002490304,0.005613457],"category_scores_gemma":[0.0001610257,0.00004329878,0.000009964177,0.0006187483,0.0004101153,0.0001066339,0.0001304818,0.00005360808,0.00008803527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002565051,"about_ca_system_score_gemma":0.00001299176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003591928,"about_ca_topic_score_gemma":0.0008034519,"domain_scores_codex":[0.9990271,0.00001295459,0.000103917,0.00059897,0.0001103199,0.0001466824],"domain_scores_gemma":[0.9994583,0.00001102438,0.00001277138,0.0004780334,0.000004030237,0.00003584947],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001340453,0.00009542437,0.8586326,0.0000128756,5.58778e-7,0.000002021122,0.0002654859,0.000002666643,0.1217903,0.002288996,0.002387638,0.01450811],"study_design_scores_gemma":[0.0001435216,0.000009962581,0.9783441,0.000007659776,0.000001222683,7.955716e-7,0.0001879848,0.00002796928,0.01029328,0.0003794219,0.01055786,0.00004624902],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9047669,0.00004981565,0.000007101889,0.001036775,0.0001131707,0.00009566081,0.000004577226,0.0000148261,0.09391119],"genre_scores_gemma":[0.9991535,0.00004845604,0.00002263896,0.0002438992,0.000002425748,0.000004406289,0.000002115075,0.000001096256,0.0005214787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1197115,"threshold_uncertainty_score":0.9952955,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02301692043601503,"score_gpt":0.2728773992540248,"score_spread":0.2498604788180098,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}