{"id":"W4413049276","doi":"10.1016/j.psj.2025.105665","title":"New molecular diagnostic targets for Avibacterium paragallinarum and a set of single-plex and multiplex qPCR methods for the rapid differential diagnosis of Mycoplasma gallisepticum, Mycoplasma synoviae, and Avibacterium paragallinarum","year":2025,"lang":"en","type":"article","venue":"Poultry Science","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"National Natural Science Foundation of China","keywords":"Mycoplasma synoviae; Biology; Microbiology; Multiplex; Mycoplasma gallisepticum; Virology; Multiplex polymerase chain reaction; Mycoplasma; Polymerase chain reaction; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007627782,0.0002844682,0.0005073395,0.0002653232,0.0005080718,0.00009901022,0.0003415054,0.0001969708,0.000105108],"category_scores_gemma":[0.00211446,0.0002172341,0.0001306707,0.0004010452,0.001430071,0.000188556,0.0002929803,0.0001722242,0.000001310623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002899825,"about_ca_system_score_gemma":0.0002563063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001596711,"about_ca_topic_score_gemma":0.00002144931,"domain_scores_codex":[0.9979916,0.0002068262,0.000487541,0.0006385014,0.0000740345,0.000601462],"domain_scores_gemma":[0.9947202,0.004274243,0.0002071712,0.0003645927,0.0003137385,0.0001200364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004581294,0.0001900589,0.02186212,0.0004400533,0.0001585343,0.000001245135,0.00029561,0.00001507181,0.9515592,0.0005892309,0.0005074693,0.02392322],"study_design_scores_gemma":[0.003829087,0.001118521,0.06208136,0.000320838,0.000419244,0.00009643274,0.0004680618,0.0008438384,0.9220725,0.000745896,0.007555956,0.000448268],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9407112,0.00648256,0.04932775,0.0008989514,0.0005134646,0.00158926,0.0004149419,0.00002464348,0.0000372015],"genre_scores_gemma":[0.9922873,0.001159042,0.005916197,0.00006889373,0.00002485327,0.0002629391,0.00005733791,0.00001665154,0.0002067883],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05157607,"threshold_uncertainty_score":0.885855,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02227419330318502,"score_gpt":0.3321576238097482,"score_spread":0.3098834305065632,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}