{"id":"W4413101122","doi":"10.1016/j.ygeno.2025.111096","title":"Genetic dissection of two elite japonica varieties reveals founder transmission and selection in breeding","year":2025,"lang":"en","type":"article","venue":"Genomics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Shanghai Academy of Agricultural Sciences","keywords":"Biology; Pedigree chart; Identity by descent; Genetics; Selection (genetic algorithm); Founder effect; Genome; Elite; Allele; Plant genetics; Evolutionary biology; Quantitative trait locus; Biotechnology; Haplotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002614208,0.0002529028,0.0002449679,0.000557854,0.0003069841,0.0002463482,0.0002986205,0.0002416336,0.0007901388],"category_scores_gemma":[0.0001962957,0.000213024,0.0003167433,0.0003704703,0.0001710699,0.0001365433,0.0004731269,0.0003905121,0.0001602655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002444488,"about_ca_system_score_gemma":0.0002052381,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001617415,"about_ca_topic_score_gemma":0.003128113,"domain_scores_codex":[0.9998854,0.00001194837,0.00001143798,0.0000454673,0.00002235049,0.00002324726],"domain_scores_gemma":[0.9998629,0.00002386898,0.00003500665,0.00001949743,0.00001386925,0.00004487782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001970453,0.00005042439,0.01444879,0.00003245766,0.00002290858,0.0004341654,0.000254398,0.0001752798,0.9771417,0.0003836376,0.00003990937,0.006819271],"study_design_scores_gemma":[0.00009656481,0.0004251233,0.8544423,0.00002414537,0.0002145831,0.001750382,0.0003631064,0.005539616,0.1322117,0.0006082288,0.004262509,0.0000616312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997454,0.00006120867,0.001887512,0.00001315357,0.000002203293,0.000009841229,0.0001687579,0.00003195441,0.00037133],"genre_scores_gemma":[0.9939711,0.00006570485,0.003543935,0.00004395862,0.000003538312,0.00002366803,0.0008580594,0.00003830104,0.001451797],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001617415,"threshold_uncertainty_score":0.003216028,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008342440177642935,"score_gpt":0.2368025414550508,"score_spread":0.2284601012774078,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}