{"id":"W4413113213","doi":"10.1093/femsyr/foaf037","title":"Taxogenomic analysis of <i>Pichia senei</i> sp. nov. and new insights into hybridization events in the <i>Pichia cactophila</i> species complex","year":2025,"lang":"en","type":"article","venue":"FEMS Yeast Research","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Great Lakes Bioenergy Research Center; Applied Molecular Biosciences Unit; National Institute of Food and Agriculture; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Office of Science; U.S. Department of Agriculture; Fundação para a Ciência e a Tecnologia; U.S. Department of Energy; National Science Foundation","keywords":"Biology; Pichia; Evolutionary biology; Zoology; Computational biology; Pichia pastoris; Genetics; Recombinant DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001143807,0.0003554947,0.0002363849,0.0009457029,0.000286055,0.0003170354,0.0001543782,0.0001666718,0.0004625218],"category_scores_gemma":[0.000240795,0.000129738,0.0003105892,0.0009591829,0.0001640055,0.0002137764,0.0003167988,0.0003071466,0.0002353303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001079836,"about_ca_system_score_gemma":0.0001745255,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001798342,"about_ca_topic_score_gemma":0.002335445,"domain_scores_codex":[0.999897,0.000008781909,0.00001623023,0.00003560621,0.00002630286,0.00001609195],"domain_scores_gemma":[0.9998351,0.00002810254,0.00003524012,0.00002332757,0.00004547611,0.00003257264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001219989,0.00003564549,0.01821872,0.0001179558,0.00002608429,0.0004583779,0.0002652718,0.00009294147,0.9718658,0.00005279987,0.00004996456,0.008694408],"study_design_scores_gemma":[0.00002155877,0.000470721,0.812903,0.00004101062,0.0002340018,0.004062672,0.00142218,0.001196005,0.1702735,0.0001056772,0.009236564,0.00003314787],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996111,0.0003286581,0.0008498373,0.000033479,0.000009119933,0.00005009118,0.001643603,0.00001837424,0.0009558597],"genre_scores_gemma":[0.9838058,0.0008475465,0.004814432,0.00008390094,0.00001919884,0.00008278897,0.008892682,0.00002555366,0.001428073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001798342,"threshold_uncertainty_score":0.003575742,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04192555270471198,"score_gpt":0.3092222922568069,"score_spread":0.2672967395520949,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}