{"id":"W4413189385","doi":"10.3390/plants14162509","title":"Transposon Dynamics Drive Genome Evolution and Regulate Genetic Mechanisms of Agronomic Traits in Cotton","year":2025,"lang":"en","type":"article","venue":"Plants","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"National Natural Science Foundation of China","keywords":"Biology; Genome; Polyploid; Ploidy; Genetics; Transposable element; Evolutionary dynamics; Gossypium; Phenotype; Genome evolution; Gene; Evolutionary biology; Computational biology; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001153147,0.0002187489,0.0001689831,0.0006938141,0.0001923346,0.0002780842,0.0001134697,0.0001550852,0.0004792394],"category_scores_gemma":[0.0001393882,0.0001331341,0.0002237523,0.0005323856,0.0001324839,0.0001790718,0.000253546,0.000186939,0.0001337112],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002948874,"about_ca_system_score_gemma":0.0001775018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002139066,"about_ca_topic_score_gemma":0.002997167,"domain_scores_codex":[0.9999049,0.000008526231,0.000007655981,0.00003965718,0.00001819455,0.00002104362],"domain_scores_gemma":[0.9999007,0.00001420386,0.00004202748,0.00000843442,0.00001402153,0.00002055326],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001762891,0.00001919695,0.04831845,0.0000676354,0.00004045436,0.0001635213,0.0002091828,0.0002989606,0.9429599,0.0002390041,0.00004005618,0.007467369],"study_design_scores_gemma":[0.00001060747,0.0001203638,0.969588,0.00001516427,0.00005480005,0.0003949757,0.0002627838,0.001762847,0.02570963,0.000298073,0.001762853,0.0000198811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983657,0.0004714802,0.0004250319,0.00001391044,0.000001946004,0.000004931615,0.0002783733,0.00001519808,0.0004234861],"genre_scores_gemma":[0.9980409,0.0003362854,0.0004739956,0.00001525077,0.000003362975,0.000009411877,0.0005285579,0.00001016962,0.0005821045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002139066,"threshold_uncertainty_score":0.004253268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01149086868880832,"score_gpt":0.2132533502935537,"score_spread":0.2017624816047454,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}