{"id":"W4413272381","doi":"10.1371/journal.pone.0330304","title":"Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide","year":2025,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke","funders":"Novo Nordisk Fonden; Novo Nordisk; European Commission","keywords":"Mobile genetic elements; Antibiotic resistance; Biology; Genetics; Microbial genetics; Gene; Antibiotics; Microbiology; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006680396,0.0003009263,0.0002358233,0.002587675,0.0002847437,0.0006485475,0.0002850898,0.000394331,0.002000897],"category_scores_gemma":[0.002155087,0.0001218342,0.0003163419,0.002959373,0.0002947356,0.0005151019,0.0006861342,0.0003640035,0.0002432224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002332201,"about_ca_system_score_gemma":0.0003736831,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003158824,"about_ca_topic_score_gemma":0.003307645,"domain_scores_codex":[0.9991579,0.0001453771,0.0001127881,0.0002811952,0.00016777,0.0001349475],"domain_scores_gemma":[0.9978141,0.0004156531,0.001174255,0.00007585496,0.000317847,0.000202325],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008369406,0.00002788622,0.9840678,0.0001132966,0.00008856815,0.0002413,0.0003724741,0.0001511279,0.004648034,0.00007828667,0.0001329494,0.009994682],"study_design_scores_gemma":[0.000004005727,0.0001040157,0.9953328,0.00006880463,0.00004650398,0.0007516358,0.001138959,0.0004159673,0.0007502091,0.00007395681,0.001307089,0.000006129105],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958571,0.001457286,0.0006558542,0.0001100014,0.000007518222,0.00002316544,0.00101619,0.000009826673,0.0008632143],"genre_scores_gemma":[0.9972181,0.0006912915,0.0007301893,0.00003751587,0.00001225379,0.00001964035,0.00104731,0.000004380822,0.0002393525],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003158824,"threshold_uncertainty_score":0.006693661,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01757017080690345,"score_gpt":0.2481828673808839,"score_spread":0.2306126965739804,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}