{"id":"W4413303244","doi":"10.1101/2025.08.17.670741","title":"PlasmidFlow: A Web-based Platform for Interactive Visualization of Plasmid-Driven Traits","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Visualization; Plasmid; Computer science; Web application; World Wide Web; Human–computer interaction; Biology; Data mining; Genetics; DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003014599,0.001757807,0.0009424611,0.003141899,0.0006780774,0.002506596,0.001975989,0.001142626,0.04083144],"category_scores_gemma":[0.005599629,0.0009166385,0.001169015,0.001384646,0.0006207286,0.003220295,0.004318518,0.002182692,0.01089773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000650752,"about_ca_system_score_gemma":0.001262093,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001832309,"about_ca_topic_score_gemma":0.001558958,"domain_scores_codex":[0.9992586,0.000123516,0.00006327453,0.0001729916,0.0003012424,0.00008038322],"domain_scores_gemma":[0.9975461,0.001217398,0.0001722645,0.0003895285,0.0003147525,0.0003597872],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002845359,0.0006653364,0.007588437,0.002094103,0.0004748442,0.001379168,0.001207982,0.01274767,0.06882057,0.02058533,0.5779692,0.303622],"study_design_scores_gemma":[0.001249989,0.0002854223,0.01352077,0.0008148103,0.000197412,0.001140411,0.0002609026,0.2270108,0.1167267,0.07096429,0.5671731,0.0006554262],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01066785,0.0003651252,0.4199305,0.0007229391,0.0003502152,0.0003472191,0.04363248,0.5189198,0.00506395],"genre_scores_gemma":[0.1332158,0.001446781,0.5877374,0.001047235,0.0003978197,0.002364818,0.1411441,0.1188694,0.0137766],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04083144,"threshold_uncertainty_score":0.1365948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01647335193116173,"score_gpt":0.2764727097539476,"score_spread":0.2599993578227858,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}