{"id":"W4413341341","doi":"10.1093/infdis/jiaf392","title":"Molecular Epidemiology of Clinical Infections Caused by <i>Serratia marcescens</i> Complex in a Tertiary Care Hospital System: Insights From Whole-Genome Sequencing","year":2025,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Hamilton Health Sciences; St. Joseph’s Healthcare Hamilton; Impact","funders":"Government of Ontario","keywords":"Serratia marcescens; Outbreak; Biology; Whole genome sequencing; Infection control; Phylogenetic tree; Multilocus sequence typing; Genome; Microbiology; Medicine; Genotype; Genetics; Virology; Gene; Escherichia coli; Intensive care medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004937873,0.0001883268,0.0002122145,0.001501365,0.0002942095,0.0007027214,0.0003172679,0.0002732797,0.001110924],"category_scores_gemma":[0.00163285,0.0001424556,0.0002597505,0.001208022,0.0003145342,0.0003311517,0.000582997,0.0002231666,0.0001309748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006029084,"about_ca_system_score_gemma":0.0005840325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01163517,"about_ca_topic_score_gemma":0.01203144,"domain_scores_codex":[0.9994127,0.0001086232,0.0001174375,0.000149411,0.00008797867,0.0001239035],"domain_scores_gemma":[0.998259,0.0002058304,0.001052191,0.00005478046,0.0001871705,0.0002409745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000443945,0.00001337536,0.9961748,0.00002222736,0.00001762735,0.0001312281,0.0001334798,0.00007267763,0.002020566,0.00001866779,0.00007375156,0.001277153],"study_design_scores_gemma":[0.000001793243,0.00005978052,0.998458,0.00001074537,0.00001179501,0.0003742475,0.0004150777,0.0003052802,0.0002333259,0.00001075203,0.0001168949,0.000002410163],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999364,0.000114543,0.00008819758,0.0000296756,0.000001099786,0.000007531585,0.000288679,0.000003625406,0.0001028379],"genre_scores_gemma":[0.999116,0.0001006084,0.0002919954,0.00002712729,0.000005564967,0.000005094074,0.000420079,0.000001740396,0.00003168137],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01163517,"threshold_uncertainty_score":0.02313495,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01235066534954545,"score_gpt":0.292533317778068,"score_spread":0.2801826524285226,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}