{"id":"W4413350469","doi":"10.21105/joss.08054","title":"slap2-utils: Tools for Processing SLAP2 Data","year":2025,"lang":"en","type":"article","venue":"The Journal of Open Source Software","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Science Foundation","keywords":"Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003110518,0.002993734,0.001253734,0.002614206,0.001002621,0.002665934,0.005066395,0.001019242,0.05712319],"category_scores_gemma":[0.009337836,0.001931822,0.002033481,0.002294739,0.001493525,0.00409824,0.005231968,0.003689711,0.03694327],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001606838,"about_ca_system_score_gemma":0.003319568,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004504153,"about_ca_topic_score_gemma":0.00490032,"domain_scores_codex":[0.9984493,0.0001498841,0.0001943058,0.0003427024,0.0006039921,0.0002597425],"domain_scores_gemma":[0.9965529,0.001191405,0.0004518447,0.0006979205,0.0007654178,0.000340514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001632536,0.0002859781,0.006424529,0.002382786,0.0004050192,0.001033131,0.001005334,0.008286088,0.02230717,0.01266812,0.8119694,0.1315999],"study_design_scores_gemma":[0.0008692351,0.0002415814,0.01294805,0.0005498156,0.0001381948,0.001505398,0.0003642251,0.1382182,0.132818,0.05935229,0.6522013,0.0007936213],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003262482,0.0001177455,0.2153888,0.0002957355,0.0001598028,0.0002939479,0.05303822,0.7229337,0.004509506],"genre_scores_gemma":[0.06629673,0.0005965338,0.3107479,0.001453807,0.0001813867,0.003185931,0.1887615,0.4122546,0.01652163],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.05712319,"threshold_uncertainty_score":0.1910961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06236703686292181,"score_gpt":0.3442194751586861,"score_spread":0.2818524382957642,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}